Browse Element(s) Details


Os.3246.1.S1_at

Description gb:AK071847.1
DB_XREF= gi:32981870
TID=Os.3246.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3246 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBb0028C01.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023120I24, full insert sequence.
FL= gb:AK071847.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3783011/11F-box family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37800OsAffx.47.1.S1_at11/1110+19895617..19901898retrotransposon protein, putative, unclassified
LOC_Os10g37810NANA10+19905699..19909455transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g37820Os.14491.2.S1_x_at3/1110+19911815..19915419transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g37820Os.47463.1.S1_x_at3/1110+19911815..19915419transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g37830Os.3246.2.S1_at11/1110+19922499..19924923F-box family protein, putative, expressed
LOC_Os10g37830Os.3246.1.S1_at11/1110+19922499..19924923F-box family protein, putative, expressed
LOC_Os10g37830Os.19456.1.S1_x_at2/1110+19922499..19924923F-box family protein, putative, expressed
LOC_Os10g37840OsAffx.6896.1.S1_at11/1110+19927329..19933081expressed protein
LOC_Os10g37840Os.23270.1.S1_at11/1110+19927329..19933081expressed protein
LOC_Os10g37840Os.51255.1.S1_x_at10/1110+19927329..19933081expressed protein
LOC_Os10g37840Os.51255.1.S1_at9/1110+19927329..19933081expressed protein
LOC_Os10g37850Os.6846.1.S1_at11/1110+19935538..19937927Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os10g37860Os.3241.1.S1_at9/1110+19941268..19942672expressed protein
LOC_Os10g37870Os.34118.1.S1_at5/1110+19948495..19948802hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3246.1.S1_at--1026--171Chr10:19922925..19922949 (25 bp)
ATTTCGTGTGGGAGGCCAAGCTGCC
LOC_Os10g37830
Os.3246.1.S1_at--683--4511Chr10:19923602..19923626 (25 bp)
GCCGAATCGAGGTAATTATCGCTTT
LOC_Os10g37830
Os.3246.1.S1_at--755--531Chr10:19923619..19923643 (25 bp)
ATCGCTTTGATCTGATATTCACTAG
LOC_Os10g37830
Os.3246.1.S1_at--64--10071Chr10:19923641..19923665 (25 bp)
TAGTAATATTTATCTGTTCCTCTGT
LOC_Os10g37830
Os.3246.1.S1_at--546--2791Chr10:19923695..19923719 (25 bp)
AAGATCGTATGAGTTGCTACTTGCA
LOC_Os10g37830
Os.3246.1.S1_at--74--6071Chr10:19923705..19923729 (25 bp)
GAGTTGCTACTTGCATCGTGATGAT
LOC_Os10g37830
Os.3246.1.S1_at--620--6271Chr10:19923727..19923751 (25 bp)
GATGTCACAAAATATCTCATGGTGT
LOC_Os10g37830
Os.3246.1.S1_at--1068--3731Chr10:19923742..19923766 (25 bp)
CTCATGGTGTGATTGACCTGTTCCT
LOC_Os10g37830
Os.3246.1.S1_at--731--5831Chr10:19923756..19923780 (25 bp)
GACCTGTTCCTAGTTTCTTGTAGAA
LOC_Os10g37830
Os.3246.1.S1_at--1066--10271Chr10:19923816..19923840 (25 bp)
TTTGCTTTCTTTTTTACTCGTGTAT
LOC_Os10g37830
Os.3246.1.S1_at--883--2851Chr10:19923851..19923875 (25 bp)
AAGTGTACCCTTAGTTCTGAAACAT
LOC_Os10g37830
Target Sequence 
ATTTCGTGTGGGAGGCCAAGCTGCCGGAGAACTACCGGTATCTGATGAGCTTCGTGGAGGGCGGCGGCGGCGGCGACGAC
GGGAGACAGCTGCGGCGGCGGCGGTGGCGGCCGGCTGGGAAGAAGGAGATCTACGCGAGGCTGGCTAGGCCTGTGCCCTT
CGATGGCGGCTCAAAGGAGTTCTGGCTGGAGAAGAGCAAAGGCAGGGTTTGCATGGCGCTATCCTCCAAATCTCTGGTGA
TAACTGGGATTGATGATAGGAGATACTGGCAACACATTCCAACTGCCGAATCGAGGTAATTATCGCTTTGATCTGATATT
CACTAGTAATATTTATCTGTTCCTCTGTGTCTTTTTTTTTCAGAAAGATGATATGATAAGATCGTATGAGTTGCTACTTG
CATCGTGATGATGTCACAAAATATCTCATGGTGTGATTGACCTGTTCCTAGTTTCTTGTAGAAAATTAATGAATGAGACC
ATATAGCTATTTATTTTTTTTGCTTTCTTTTTTACTCGTGTATTCAACTCACAAAGTGTACCCTTAGTTCTGAAACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3246.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis