Browse Element(s) Details


Os.51255.1.S1_at

Description gb:AK062345.1
DB_XREF= gi:32972363
TID=Os.51255.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51255 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-101-F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-101-F07, full insert sequence.
FL= gb:AK062345.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g378409/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37810NANA10+19905699..19909455transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g37820Os.14491.2.S1_x_at3/1110+19911815..19915419transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g37820Os.47463.1.S1_x_at3/1110+19911815..19915419transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g37830Os.3246.2.S1_at11/1110+19922499..19924923F-box family protein, putative, expressed
LOC_Os10g37830Os.3246.1.S1_at11/1110+19922499..19924923F-box family protein, putative, expressed
LOC_Os10g37830Os.19456.1.S1_x_at2/1110+19922499..19924923F-box family protein, putative, expressed
LOC_Os10g37840OsAffx.6896.1.S1_at11/1110+19927329..19933081expressed protein
LOC_Os10g37840Os.23270.1.S1_at11/1110+19927329..19933081expressed protein
LOC_Os10g37840Os.51255.1.S1_x_at10/1110+19927329..19933081expressed protein
LOC_Os10g37840Os.51255.1.S1_at9/1110+19927329..19933081expressed protein
LOC_Os10g37850Os.6846.1.S1_at11/1110+19935538..19937927Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os10g37860Os.3241.1.S1_at9/1110+19941268..19942672expressed protein
LOC_Os10g37870Os.34118.1.S1_at5/1110+19948495..19948802hypothetical protein
LOC_Os10g37880Os.12222.1.S1_a_at11/1110+19951767..19955325oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g37880Os.47280.1.S1_x_at2/1110+19951767..19955325oxidoreductase, 2OG-Fe oxygenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51255.1.S1_at--611--2471NONE
AACACCACATCTGTCTTTTGATTCT
NONE
Os.51255.1.S1_at--1001--3371NONE
CACCACATCTGTCTTTTGATTCTTG
NONE
Os.51255.1.S1_at--319--4211Chr10:19929752..19929776 (25 bp)
CCCCTTTTCTGGCATAAGTGAGTCT
LOC_Os10g37840
Os.51255.1.S1_at--390--2871Chr10:19929767..19929791 (25 bp)
AAGTGAGTCTCTGCAACTGTTTTCT
LOC_Os10g37840
Os.51255.1.S1_at--17--6111Chr10:19929771..19929795 (25 bp)
GAGTCTCTGCAACTGTTTTCTTGTA
LOC_Os10g37840
Os.51255.1.S1_at--570--3871Chr10:19929783..19929807 (25 bp)
CTGTTTTCTTGTAACAAATGGCAAA
LOC_Os10g37840
Os.51255.1.S1_at--874--8231Chr10:19929802..19929826 (25 bp)
GGCAAAGATTTGTATGTGTGGAACT
LOC_Os10g37840
Os.51255.1.S1_at--1022--7471Chr10:19929817..19929841 (25 bp)
GTGTGGAACTGTGGGTTGATAACAT
LOC_Os10g37840
Os.51255.1.S1_at--57--2571Chr10:19929823..19929847 (25 bp)
AACTGTGGGTTGATAACATTGAGAT
LOC_Os10g37840
Os.51255.1.S1_at--601--5271Chr10:19929848..19929872 (25 bp)
GAATGCATGAAGCATCATACCGTTT
LOC_Os10g37840
Os.51255.1.S1_at--352--671Chr10:19929854..19929878 (25 bp)
ATGAAGCATCATACCGTTTGTGCTG
LOC_Os10g37840
Target Sequence 
AACACCACATCTGTCTTTTGATTCTTGCTAGCTCATATCAATTGGCAATCAGTTGTGCATACGAGGATATTGGGATCCGC
CTGAAGATATTTCCAAATATGCCATGATTGAGTGGTTCAAAAGTCAGATGCAGGAAGCTGGAATTGTTGATTTGAGGGAG
GATTTGTACTTCCCTACCTTTTCTGNNANNNNCCNNNNNNNNNNNCNCNNNNNNNNGNNNNNNNNNNTTTCTATGTTTAA
GTTTTGTTCTTTTCTCCCCCTTTTCTGGCATAAGTGAGTCTCTGCAACTGTTTTCTTGTAACAAATGGCAAAGATTTGTA
TGTGTGGAACTGTGGGTTGATAACATTGAGATGAATGCATGAAGCATCATACCGTTTGTGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51255.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis