Browse Element(s) Details


Os.12847.1.S1_at

Description gb:AK109263.1
DB_XREF= gi:32994472
TID=Os.12847.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12847 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-185-B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-185-B04, full insert sequence.
FL= gb:AK109263.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3751011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37480Os.2524.2.S1_x_at11/1110+19731246..19740880Protein kinase domain containing protein, expressed
LOC_Os10g37480Os.2524.1.S1_at11/1110+19731246..19740880Protein kinase domain containing protein, expressed
LOC_Os10g37490OsAffx.18556.1.S1_at11/1110+19741137..19744510DNA excision repair protein ERCC-1, putative, expressed
LOC_Os10g37490OsAffx.18556.2.S1_x_at10/1110+19741137..19744510DNA excision repair protein ERCC-1, putative, expressed
LOC_Os10g37500Os.2528.1.S1_x_at7/1110+19752376..19753974ATPase, AAA family protein, expressed
LOC_Os10g37500Os.2528.1.S1_at4/1110+19752376..19753974ATPase, AAA family protein, expressed
LOC_Os10g37510Os.12847.1.S1_at11/1110+19757663..19758370expressed protein
LOC_Os10g37520Os.2506.1.S1_at11/1110+19762051..19765321Major Facilitator Superfamily protein, expressed
LOC_Os10g37530Os.46850.1.S1_at11/1110+19765911..19766854Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os10g37540Os.46846.1.S1_at11/1110+19768702..19770368F-box domain containing protein, expressed
LOC_Os10g37560Os.41695.15.S1_s_at11/1110+19774762..19777504expressed protein
LOC_Os10g37560Os.41695.2.S1_x_at10/1110+19774762..19777504expressed protein
LOC_Os10g37560Os.41695.3.S1_x_at9/1110+19774762..19777504expressed protein
LOC_Os10g37560Os.41695.5.S1_x_at9/1110+19774762..19777504expressed protein
LOC_Os10g37570OsAffx.20193.1.S1_at11/1110+19779297..19780514F-box domain containing protein
LOC_Os10g37580OsAffx.30703.1.S1_at11/1110+19781388..19782638hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12847.1.S1_at--596--9491Chr10:19757905..19757929 (25 bp)
TCTCCGCATGCGTGAGGCAGGCAAT
LOC_Os10g37510
Os.12847.1.S1_at--948--5771Chr10:19758064..19758088 (25 bp)
GACGAGAAAGGCTACTGCAACACCA
LOC_Os10g37510
Os.12847.1.S1_at--400--4431Chr10:19758094..19758118 (25 bp)
GCCATGGTCCTATGCTATTTGGGCA
LOC_Os10g37510
Os.12847.1.S1_at--457--4411Chr10:19758156..19758180 (25 bp)
GCCAGCCAAAATGACTCTCCAAGTT
LOC_Os10g37510
Os.12847.1.S1_at--762--3811Chr10:19758172..19758196 (25 bp)
CTCCAAGTTTGACCAGTGAGTGTTG
LOC_Os10g37510
Os.12847.1.S1_at--478--4351Chr10:19758184..19758208 (25 bp)
CCAGTGAGTGTTGTGATTTGGTCAG
LOC_Os10g37510
Os.12847.1.S1_at--968--1691Chr10:19758207..19758231 (25 bp)
AGCCAAATGGCTTAGGCAACCGAAT
LOC_Os10g37510
Os.12847.1.S1_at--733--6131Chr10:19758245..19758269 (25 bp)
GAGGGTATTTTCTCTTCATATTTAA
LOC_Os10g37510
Os.12847.1.S1_at--816--8051Chr10:19758283..19758307 (25 bp)
GGAGAGTTATTTGGCTATTCTCTTG
LOC_Os10g37510
Os.12847.1.S1_at--659--2291Chr10:19758328..19758352 (25 bp)
AAATGTTGGCTTGTGTTGGACTACT
LOC_Os10g37510
Os.12847.1.S1_at--366--10831Chr10:19758343..19758367 (25 bp)
TTGGACTACTGCGTCCCGGGCTGAG
LOC_Os10g37510
Target Sequence 
TCTCCGCATGCGTGAGGCAGGCAATGACGGCGGCGGCGGCTCCCCGCGCACGTGGGCGGCGATGAGGCAGGCGGGAACGG
CTGCGGCGGCTCCCTGCGCGCGCGAGGCAGGTGGCGACGGCTCCCCGCACGCGCGAGGCAGGCGACGACGGTGGCGAACG
ACGAGAAAGGCTACTGCAACACCACCGCTGCCATGGTCCTATGCTATTTGGGCAAAGAGAGAGATGGTAGGAGTGGTGGG
GCCCATGGTTGGCCAGCCAAAATGACTCTCCAAGTTTGACCAGTGAGTGTTGTGATTTGGTCAGCCAAATGGCTTAGGCA
ACCGAATAGAAAGACTGTTAGAGGGTATTTTCTCTTCATATTTAACAAAATTTAGTTTGGAGAGTTATTTGGCTATTCTC
TTGAATATACTATAAGATGTGTGAAATGTTGGCTTGTGTTGGACTACTGCGTCCCGGGCTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12847.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis