Browse Element(s) Details


Os.2160.2.S1_x_at

Description gb:AK067329.1
DB_XREF= gi:32977347
TID=Os.2160.2
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2160 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0481E12.40 (P0481E12.40), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013100D22, full insert sequence.
FL= gb:AK067329.1 gb:AK099515.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5460010/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54570NANA1+31718109..31719083hypothetical protein
LOC_Os01g54580Os.17293.2.S1_x_at11/111+31721741..31726917phosphate translocator, putative, expressed
LOC_Os01g54580Os.17293.1.S1_at11/111+31721741..31726917phosphate translocator, putative, expressed
LOC_Os01g54580Os.17293.2.S1_at9/111+31721741..31726917phosphate translocator, putative, expressed
LOC_Os01g54590Os.35653.1.S1_a_at11/111+31730672..31734109Ras-related protein RIC2, putative, expressed
LOC_Os01g54590Os.57489.1.S1_x_at1/111+31730672..31734109Ras-related protein RIC2, putative, expressed
LOC_Os01g54600Os.2160.2.S1_x_at10/111+31735980..31737674WRKY DNA binding domain containing protein, expressed
LOC_Os01g54610OsAffx.11608.1.S1_at11/111+31746785..31748376hypothetical protein
LOC_Os01g54620Os.18724.2.S1_x_at11/111+31749794..31755518Cellulose synthase A catalytic subunit 8, putative, expressed
LOC_Os01g54620Os.18724.1.S1_at11/111+31749794..31755518Cellulose synthase A catalytic subunit 8, putative, expressed
LOC_Os01g54620Os.18724.1.S1_a_at11/111+31749794..31755518Cellulose synthase A catalytic subunit 8, putative, expressed
LOC_Os01g54620OsAffx.16586.1.S1_x_at1/111+31749794..31755518Cellulose synthase A catalytic subunit 8, putative, expressed
LOC_Os01g54630OsAffx.23789.1.S1_at2/111+31758779..31760050Leucine Rich Repeat family protein
LOC_Os01g54640OsAffx.24460.1.S1_at5/111+31761117..31762939retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2160.2.S1_x_at--802--4391Chr01:31736523..31736547 (25 bp)
GCCAAAGCCTGAGCCGGTGGCTGAC
LOC_Os01g54600
Os.2160.2.S1_x_at--823--5631Chr01:31736497..31736521 (25 bp)
GACAGCACCCCGAGCCAGCGGAGAA
LOC_Os01g54600
Os.2160.2.S1_x_at--1025--4351Chr01:31736483..31736507 (25 bp)
CCAGCGGAGAACGAATCGTCGGCGT
LOC_Os01g54600
Os.2160.2.S1_x_at--438--3051Chr01:31736419..31736443 (25 bp)
AATCTGAGCCGGTTGTGAAGCAGGA
LOC_Os01g54600
Os.2160.2.S1_x_at--1012--1671Chr01:31736359..31736383 (25 bp)
AGCCGGCGGCGGTCACAACCACGGT
LOC_Os01g54600
Os.2160.2.S1_x_at--480--6171Chr01:31736309..31736333 (25 bp)
GAGGATGAGAACTTCGACTTCGGAT
LOC_Os01g54600
Os.2160.2.S1_x_at--285--7991Chr01:31736288..31736312 (25 bp)
GGATGGATCGACCAGTACCACCCGA
LOC_Os01g54600
Os.2160.2.S1_x_at--808--9091Chr01:31736108..31736132 (25 bp)
TGCTCCTGATGATCACCTCCTCTTT
LOC_Os01g54600
Os.2160.2.S1_x_at--537--10711Chr01:31736045..31736069 (25 bp)
TTGCTTTTCTTTAGTTCTCCTTGGA
LOC_Os01g54600
Os.2160.2.S1_x_at--1064--10051Chr01:31736002..31736026 (25 bp)
TAGTACATAGCTTGGGTGATCAATG
LOC_Os01g54600
Os.2160.2.S1_x_at--44--811Chr01:31735980..31736004 (25 bp)
ATGGGAGTGAGTGGCTTAACTGTTC
NONE
Target Sequence 
GCCAAAGCCTGAGCCGGTGGCTGACGGACAGCACCCCGAGCCAGCGGAGAACGAATCGTCGGCGTCGGCGGAGCTGGAGG
TACCGGAGCCGGAGCCGGANCAGGAATCTGAGCCGGTTGTGAAGCAGGAGGAGGAGCAGAAGGAGGAACAGAAGGCTGTG
GTTGAGCCGGCGGCGGTCACAACCACGGTGGCGCCGGCGCCGGCGGTCGAGGAGGAGGATGAGAACTTCGACTTCGGATG
GATCGACCAGTACCACCCGACGTGGCACCGGTCGTACGCGCCGCTGCTGCCGCCGGAGGAGTGGGAGCGCGANCTGCAAG
GGGACNGACGCGCTGTTCNCGGGGCTCGGCGAGCTCCCGGAGTGCGCCGTCGTGTTCGGCCGCCGGCGCGAGCTCGGCCT
GGCGGCCNCCGCGCCGTGCTCCTGATGATCACCTCCTCTTTTCTTTTTCCTCCCCTTTTACAATTTCCCTTTTTTTTTTT
TNTTTTGCTTTTCTTTAGTTCTCCTTGGAGTAATTTGGATTGGAGNTTAGTACATAGCTTGGGTGATCAATGGGAGTGAG
TGGCTTAACTGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2160.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis