Browse Element(s) Details


OsAffx.11605.1.S1_at

Description tigr:9629.m05311
TID=OsAffx.11605.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=GDSL-like LipaseAcylhydrolase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5447011/11GDSL-like Lipase/Acylhydrolase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54420Os.32564.1.S2_at11/111+31635092..31639733dynamin family protein, putative, expressed
LOC_Os01g54420Os.32564.1.S1_at11/111+31635092..31639733dynamin family protein, putative, expressed
LOC_Os01g54430Os.34474.2.S1_at2/111+31645119..31645936Plastocyanin-like domain containing protein
LOC_Os01g54440OsAffx.21624.1.S1_s_at11/111+31647011..31648696expressed protein
LOC_Os01g54450Os.42124.1.S1_x_at11/111+31651329..31651865nuclear protein, putative, expressed
LOC_Os01g54450Os.42124.1.S1_at11/111+31651329..31651865nuclear protein, putative, expressed
LOC_Os01g54460NANA1+31654170..31655105hypothetical protein
LOC_Os01g54470OsAffx.11605.1.S1_at11/111+31658380..31659915GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g54470Os.28229.2.S1_x_at2/111+31658380..31659915GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g54470Os.51561.1.S1_x_at1/111+31658380..31659915GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g54480Os.8233.1.S1_at11/111+31660081..31663929Protein kinase domain containing protein, expressed
LOC_Os01g54480Os.8233.1.S1_s_at11/111+31660081..31663929Protein kinase domain containing protein, expressed
LOC_Os01g54490OsAffx.9441.1.S1_at11/111+31670212..31672370Phosphatidylethanolamine-binding protein
LOC_Os01g54510Os.12746.1.S1_at11/111+31676460..31679999MAC/Perforin domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11605.1.S1_at--501--1571Chr01:31659223..31659351 (25 bp)
AGCTCAGGACGCTGTACAACTACGG
LOC_Os01g54470
OsAffx.11605.1.S1_at--697--8451Chr01:31659408..31659432 (25 bp)
TGGCGCAGAACAGCCGAAACGGCGT
LOC_Os01g54470
OsAffx.11605.1.S1_at--626--4211Chr01:31659421..31659445 (25 bp)
CCGAAACGGCGTCACCTGCATCGAG
LOC_Os01g54470
OsAffx.11605.1.S1_at--738--9691Chr01:31659450..31659474 (25 bp)
TCAACAGCGCAGTCCGGATGTTCAA
LOC_Os01g54470
OsAffx.11605.1.S1_at--45--8771Chr01:31659468..31659492 (25 bp)
TGTTCAACCGGAGGGTGGTCGTCCT
LOC_Os01g54470
OsAffx.11605.1.S1_at--927--1051Chr01:31659479..31659503 (25 bp)
AGGGTGGTCGTCCTCGTCAACCAGT
LOC_Os01g54470
OsAffx.11605.1.S1_at--491--8791Chr01:31659528..31659552 (25 bp)
TGTTCACCTACATCAACTGCTACGG
LOC_Os01g54470
OsAffx.11605.1.S1_at--589--1971Chr01:31659543..31659567 (25 bp)
ACTGCTACGGCATCTTCGAGAGCAT
LOC_Os01g54470
OsAffx.11605.1.S1_at--1071--9351Chr01:31659558..31659582 (25 bp)
TCGAGAGCATCATGCGCACGCCGGT
LOC_Os01g54470
OsAffx.11605.1.S1_at--795--9191Chr01:31659825..31659849 (25 bp)
TGCCAATATCTTCGTCGGCCGGAGG
LOC_Os01g54470
OsAffx.11605.1.S1_at--427--4651Chr01:31659859..31659883 (25 bp)
GCGGCGATGCGGTCCGACGTTTACC
LOC_Os01g54470
Target Sequence 
AGCTCAGGACGCTGTACAACTACGGGGCCAGGAAGGTGGCGGTATTCGGGGTAGGGCAGGTGGGGTGCAGCCCGAACGAG
CTGGCGCAGAACAGCCGAAACGGCGTCACCTGCATCGAGCGGATCAACAGCGCAGTCCGGATGTTCAACCGGAGGGTGGT
CGTCCTCGTCAACCAGTTCAACCGCTTGTTGCCCGGCGCGCTGTTCACCTACATCAACTGCTACGGCATCTTCGAGAGCA
TCATGCGCACGCCGGTGGAGCACGGGCTGGCGGTGACGAACAGGGGGTGCTGCGGGGTGGGGAGGAACAACGGGCAGGTG
ACGTGCCTCCCGTACCAGGCGCCGTGCGCCAACCGGGACGAGTACCTCTTCTGGGACGCGTTCCACCCGACGGAGGCTGC
CAATATCTTCGTCGGCCGGAGGGCCTACAGCGCGGCGATGCGGTCCGACGTTTACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11605.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis