Browse Element(s) Details


Os.2131.1.S1_s_at

Description gb:AK122010.1
DB_XREF= gi:37991633
TID=Os.2131.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.2131 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative dihydroorotase (P0481E12.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033111I01, full insert sequence.
FL= gb:AK122010.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5437011/11Dihydroorotase, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54320OsAffx.23786.1.S1_at10/111+31589851..31590054hypothetical protein
LOC_Os01g54330OsAffx.11600.1.S1_at10/111+31593548..31595101hypothetical protein
LOC_Os01g54340Os.40424.1.S1_at11/111+31599195..31601223uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os01g54340Os.12793.1.S1_x_at10/111+31599195..31601223uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os01g54350Os.2128.1.S1_at11/111+31602090..31606233protein kinase, putative, expressed
LOC_Os01g54360OsAffx.23787.2.S1_x_at3/111+31607700..31610060hypothetical protein
LOC_Os01g54360OsAffx.23787.1.S1_at3/111+31607700..31610060hypothetical protein
LOC_Os01g54360OsAffx.23787.2.S1_at2/111+31607700..31610060hypothetical protein
LOC_Os01g54370Os.2131.1.S1_at11/111+31610534..31613542Dihydroorotase, mitochondrial precursor, putative, expressed
LOC_Os01g54370Os.2131.1.S1_s_at11/111+31610534..31613542Dihydroorotase, mitochondrial precursor, putative, expressed
LOC_Os01g54380Os.2132.1.S1_s_at11/111+31613517..31614882pentatricopeptide, putative, expressed
LOC_Os01g54390Os.33221.1.S1_at11/111+31615018..31619643S4 domain containing protein, expressed
LOC_Os01g54390Os.33221.2.S1_x_at11/111+31615018..31619643S4 domain containing protein, expressed
LOC_Os01g54400Os.2135.1.S1_at11/111+31625790..31627032VQ motif family protein, expressed
LOC_Os01g54410OsAffx.11602.1.S1_at11/111+31629606..31629885hypothetical protein
LOC_Os01g54420Os.32564.1.S2_at11/111+31635092..31639733dynamin family protein, putative, expressed
LOC_Os01g54420Os.32564.1.S1_at11/111+31635092..31639733dynamin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004151molecular_functiondihydroorotase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2131.1.S1_s_at--479--4311Chr01:31613079..31613103 (25 bp)
GCCTTCCAAGGAACACTTCAAAGAT
LOC_Os01g54370
Os.2131.1.S1_s_at--1037--5871Chr01:31613116..31613140 (25 bp)
GAGCGCCTGGAAAGTACCTGATACA
LOC_Os01g54370
Os.2131.1.S1_s_at--772--6011Chr01:31613157..31613181 (25 bp)
GAGAGATCGTGCCTATGTTTACTGG
LOC_Os01g54370
Os.2131.1.S1_s_at--171--751Chr01:31613171..31613195 (25 bp)
ATGTTTACTGGCAACACCCTCGAAT
LOC_Os01g54370
Os.2131.1.S1_s_at--545--8491Chr01:31613195..31613219 (25 bp)
TGGCTTCCATCCGATCAACTTGAAG
LOC_Os01g54370
Os.2131.1.S1_s_at--1014--6051Chr01:31613267..31613291 (25 bp)
GAGTTATATTATCATGCCTTCCCCT
LOC_Os01g54370
Os.2131.1.S1_s_at--933--3831Chr01:31613290..31613314 (25 bp)
CTGTCCCCAACTCTGTAAGAATCAA
LOC_Os01g54370
Os.2131.1.S1_s_at--424--10511Chr01:31613316..31613340 (25 bp)
TTCAAACTTTTCCAGTCATCACTCA
LOC_Os01g54370
Os.2131.1.S1_s_at--228--3811Chr01:31613346..31613370 (25 bp)
CTCCCCTTTTGGAATTCTCGAAGCA
LOC_Os01g54370
Os.2131.1.S1_s_at--726--8991Chr01:31613409..31613433 (25 bp)
TGAAGAAACTGCTTGTCATGCTGTT
LOC_Os01g54370
Os.2131.1.S1_s_at--971--6551Chr01:31613484..31613508 (25 bp)
GATTCAGACATCACAGAACCGATAA
LOC_Os01g54370
Target Sequence 
GCCTTCCAAGGAACACTTCAAAGATTGTNCTTAGAAAGAGCGCCTGGAAAGTACCTGATACATACTCATATAGTTCAGGA
GAGATCGTGCCTATGTTTACTGGCAACACCCTCGAATGGCTTCCATCCGATCAACTTGAAGAGTAAACAGAATAAATTTA
TGCTTGGGGTCGGGGGAGAACATTCCTGGAGTTATATTATCATGCCTTCCCCTGTCCCCAACTCTGTAAGAATCAATTTC
AAACTTTTCCAGTCATCACTCATCAGCCTCCCCTTTTGGAATTCTCGAAGCAATATTGCTGAGAAGAACTTATTGAAAGC
AAGTAAGCAATGAAGAAACTGCTTGTCATGCTGTTGTATACATTTGATCGAGTGCTAGAAGGGCACNAGTGTAAACTTTA
TATTGGTGATTCAGACATCACAGAACCGATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2131.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis