Browse Element(s) Details


Os.2128.1.S1_at

Description gb:AK102467.1
DB_XREF= gi:32987676
TID=Os.2128.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2128 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0481E12.8 (P0481E12.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033094F14, full insert sequence.
FL= gb:AK102467.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5435011/11protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54300Os.2123.1.S1_at11/111+31579722..31581752glycosyl hydrolase family 5 protein, putative, expressed
LOC_Os01g54310OsAffx.9446.1.S1_at11/111+31582626..31582931hypothetical protein
LOC_Os01g54320OsAffx.23786.1.S1_at10/111+31589851..31590054hypothetical protein
LOC_Os01g54330OsAffx.11600.1.S1_at10/111+31593548..31595101hypothetical protein
LOC_Os01g54340Os.40424.1.S1_at11/111+31599195..31601223uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os01g54340Os.12793.1.S1_x_at10/111+31599195..31601223uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os01g54350Os.2128.1.S1_at11/111+31602090..31606233protein kinase, putative, expressed
LOC_Os01g54360OsAffx.23787.2.S1_x_at3/111+31607700..31610060hypothetical protein
LOC_Os01g54360OsAffx.23787.1.S1_at3/111+31607700..31610060hypothetical protein
LOC_Os01g54360OsAffx.23787.2.S1_at2/111+31607700..31610060hypothetical protein
LOC_Os01g54370Os.2131.1.S1_at11/111+31610534..31613542Dihydroorotase, mitochondrial precursor, putative, expressed
LOC_Os01g54370Os.2131.1.S1_s_at11/111+31610534..31613542Dihydroorotase, mitochondrial precursor, putative, expressed
LOC_Os01g54380Os.2132.1.S1_s_at11/111+31613517..31614882pentatricopeptide, putative, expressed
LOC_Os01g54390Os.33221.1.S1_at11/111+31615018..31619643S4 domain containing protein, expressed
LOC_Os01g54390Os.33221.2.S1_x_at11/111+31615018..31619643S4 domain containing protein, expressed
LOC_Os01g54400Os.2135.1.S1_at11/111+31625790..31627032VQ motif family protein, expressed
LOC_Os01g54410OsAffx.11602.1.S1_at11/111+31629606..31629885hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2128.1.S1_at--672--10731Chr01:31603200..31603224 (25 bp)
TTGAATCCATTCCAGGCAGCTTTTG
LOC_Os01g54350
Os.2128.1.S1_at--394--351Chr01:31602581..31602602 (22 bp)
ATAAGAACGAGAGGCCGGTCATCCC
LOC_Os01g54350
Os.2128.1.S1_at--573--4391Chr01:31602541..31602565 (25 bp)
GCCACTACGGCTTCTAATTGAGCAA
LOC_Os01g54350
Os.2128.1.S1_at--547--3171Chr01:31602526..31602550 (25 bp)
AATTGAGCAATGTTGGGCCTCGCAA
LOC_Os01g54350
Os.2128.1.S1_at--329--8171Chr01:31602429..31602453 (25 bp)
GGAACACTGGACAATATGCCATGCT
LOC_Os01g54350
Os.2128.1.S1_at--980--1471Chr01:31602377..31602401 (25 bp)
AGAATTGGCTAGCTCACTGGGTCCA
LOC_Os01g54350
Os.2128.1.S1_at--12--2411Chr01:31602345..31602369 (25 bp)
AAACATACCCATCATGATCTCTCTG
LOC_Os01g54350
Os.2128.1.S1_at--102--9511Chr01:31602287..31602311 (25 bp)
TCTCCCTTCCAAACTATGCTAATCG
LOC_Os01g54350
Os.2128.1.S1_at--377--631Chr01:31602272..31602296 (25 bp)
ATGCTAATCGGATAGGCCTCAGAAT
LOC_Os01g54350
Os.2128.1.S1_at--340--791Chr01:31602207..31602231 (25 bp)
ATGTGTTTGTCTTCGCGATTTTATA
LOC_Os01g54350
Os.2128.1.S1_at--171--5591Chr01:31602100..31602124 (25 bp)
GAAATGTCTCTATGCAATTCCTTGA
LOC_Os01g54350
Target Sequence 
TTGAATCCATTCCAGGCAGCTTTTGCTGTTTTTGATAAGAACGAGAGGCCGGTCATCCCCAGTAGCTGCCCTGCGCCACT
ACGGCTTCTAATTGAGCAATGTTGGGCCTCGCAACCAGATAAAAGGCCTGAATTCTGGCAAATAGTACAGATATTGGACA
AGTTTAAGGCGGTTCTNGATAAAGATGGAACACTGGACAATATGCCATGCTTAAACTTGCAAGGAACTCATGATCACAAG
AATTGGCTAGCTCACTGGGTCCAGAAGCTCAAACATACCCATCATGATCTCTCTGGACCTCCGCCACCAAAATTGNTGTA
GTTAATCCTCTCCCTTCCAAACTATGCTAATCGGATAGGCCTCAGAATGTAACTGTCAATTTTTTGCTTTGTTATATAGG
AAAAATATATGTGTTTGTCTTCGCGATTTTATAGCACAGTAAACATTTGCTTAGCTTTGCTANTGACATTTTCTTCTTTT
TGNTTCGTCTGNTACACTGNTTGATACAAGTGACAGAAATGTCTCTATGCAATTCCTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2128.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis