Browse Element(s) Details


Os.2123.1.S1_at

Description gb:AU093960
DB_XREF= gi:8856642
DB_XREF=AU093960
CLONE=E1432
TID=Os.2123.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.2123 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative (1-4)-beta-mannan endohydrolase (OSJNBa0014K08.29), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5430011/11glycosyl hydrolase family 5 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54270OsAffx.9447.1.S1_x_at11/111+31547169..31555414transposon protein, putative, unclassified, expressed
LOC_Os01g54270OsAffx.9447.1.S1_at11/111+31547169..31555414transposon protein, putative, unclassified, expressed
LOC_Os01g54270Os.10731.1.A1_a_at2/111+31547169..31555414transposon protein, putative, unclassified, expressed
LOC_Os01g54270OsAffx.20729.1.S1_x_at1/111+31547169..31555414transposon protein, putative, unclassified, expressed
LOC_Os01g54270Os.38764.1.S1_x_at1/111+31547169..31555414transposon protein, putative, unclassified, expressed
LOC_Os01g54280OsAffx.11599.1.S1_at11/111+31556935..31557291hypothetical protein
LOC_Os01g54290NANA1+31561363..31565748retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g54300Os.2123.1.S1_at11/111+31579722..31581752glycosyl hydrolase family 5 protein, putative, expressed
LOC_Os01g54310OsAffx.9446.1.S1_at11/111+31582626..31582931hypothetical protein
LOC_Os01g54320OsAffx.23786.1.S1_at10/111+31589851..31590054hypothetical protein
LOC_Os01g54330OsAffx.11600.1.S1_at10/111+31593548..31595101hypothetical protein
LOC_Os01g54340Os.40424.1.S1_at11/111+31599195..31601223uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os01g54340Os.12793.1.S1_x_at10/111+31599195..31601223uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os01g54350Os.2128.1.S1_at11/111+31602090..31606233protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2123.1.S1_at--995--9891Chr01:31580372..31580396 (25 bp)
TACGGCCCGACGAGTTCTCAAGAAA
LOC_Os01g54300
Os.2123.1.S1_at--1140--5511Chr01:31580351..31580375 (25 bp)
GAAAAGCTGAACATCAATCCGGGAG
LOC_Os01g54300
Os.2123.1.S1_at--547--9711Chr01:31580338..31580362 (25 bp)
TCAATCCGGGAGAATGGTTCCCCAA
LOC_Os01g54300
Os.2123.1.S1_at--9--7951Chr01:31580301..31580325 (25 bp)
GGATTTCATCCGCAACTCCAAAATA
LOC_Os01g54300
Os.2123.1.S1_at--800--9851Chr01:31580278..31580302 (25 bp)
TACAAGACATCGACTTTGCTTCCGT
LOC_Os01g54300
Os.2123.1.S1_at--609--10651Chr01:31580259..31580283 (25 bp)
TTCCGTCCATGTTTACCCAGACAAT
LOC_Os01g54300
Os.2123.1.S1_at--784--1811Chr01:31579978..31580002 (25 bp)
ACGCGCACCGGGACGTCCTGTACAG
LOC_Os01g54300
Os.2123.1.S1_at--77--8011Chr01:31579866..31579890 (25 bp)
GGAGGAGTACCACGACGGCTTCTCC
LOC_Os01g54300
Os.2123.1.S1_at--768--10591Chr01:31579847..31579871 (25 bp)
TTCTCCATCGTACCCAGCGAGAGGC
LOC_Os01g54300
Os.2123.1.S1_at--682--8831Chr01:31579807..31579831 (25 bp)
TGATCAAGGAGCAGTCGTGCCGGCT
LOC_Os01g54300
Os.2123.1.S1_at--1023--9711Chr01:31579741..31579765 (25 bp)
TCAAGACGGTGTGCGCCTGATCGTT
LOC_Os01g54300
Target Sequence 
TACGGCCCGACGAGTTCTCAAGAAAAGCTGAACATCAATCCGGGAGAATGGTTCCCCAACAACTACGGCGCGGATTTCAT
CCGCAACTCCAAAATACAAGACATCGACTTTGCTTCCGTCCATGTTTACCCAGACAATTGGTTGCANGCACGNCAGTCTN
GACGAGAAGNTCAAGTTCATGACGNGGTGGATCACCGCCNACGTGGAGGACGGCGACGGGGNAGCTNGAGAAGCCCGTGC
TGGTGACGGAGTTCGGGCTNTCGCACCAGGTGGAGGGCTTCGAAGACGCGCACCGGGACGTCCTGTACAGGGCGGTGTAN
GACATCGTCCACGGCTCGGCCAGGCGGGGCGGCGCCGCCGGCGGCGCACTCGTGTGGCAGCTCGCCGCCGAGGGCATGGA
GGAGTACCACGACGGCTTCTCCATCGTACCCAGCGAGAGGCCGTCCATGATGCGGCTGATCAAGGAGCAGTCGTGCCGGC
TCGCCGCGGTGAGGTACGGCGAGGAGGGGGCCAGGAAGGTCCTCAAGACGGTGTGCGCCTGATCGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2123.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis