Browse Element(s) Details


OsAffx.23787.1.S1_at

Description gb:NM_191197.1
DB_XREF= gi:34909477
GEN=P0481E12.9
TID=OsAffx.23787.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0481E12.9 (P0481E12.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g543603/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54310OsAffx.9446.1.S1_at11/111+31582626..31582931hypothetical protein
LOC_Os01g54320OsAffx.23786.1.S1_at10/111+31589851..31590054hypothetical protein
LOC_Os01g54330OsAffx.11600.1.S1_at10/111+31593548..31595101hypothetical protein
LOC_Os01g54340Os.40424.1.S1_at11/111+31599195..31601223uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os01g54340Os.12793.1.S1_x_at10/111+31599195..31601223uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os01g54350Os.2128.1.S1_at11/111+31602090..31606233protein kinase, putative, expressed
LOC_Os01g54360OsAffx.23787.2.S1_x_at3/111+31607700..31610060hypothetical protein
LOC_Os01g54360OsAffx.23787.1.S1_at3/111+31607700..31610060hypothetical protein
LOC_Os01g54360OsAffx.23787.2.S1_at2/111+31607700..31610060hypothetical protein
LOC_Os01g54370Os.2131.1.S1_at11/111+31610534..31613542Dihydroorotase, mitochondrial precursor, putative, expressed
LOC_Os01g54370Os.2131.1.S1_s_at11/111+31610534..31613542Dihydroorotase, mitochondrial precursor, putative, expressed
LOC_Os01g54380Os.2132.1.S1_s_at11/111+31613517..31614882pentatricopeptide, putative, expressed
LOC_Os01g54390Os.33221.1.S1_at11/111+31615018..31619643S4 domain containing protein, expressed
LOC_Os01g54390Os.33221.2.S1_x_at11/111+31615018..31619643S4 domain containing protein, expressed
LOC_Os01g54400Os.2135.1.S1_at11/111+31625790..31627032VQ motif family protein, expressed
LOC_Os01g54410OsAffx.11602.1.S1_at11/111+31629606..31629885hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23787.1.S1_at--878--8691Chr01:31609564..31609588 (25 bp)
TGTGCCAACCATCTCCAGATCGATG
LOC_Os01g54360
OsAffx.23787.1.S1_at--845--9211Chr01:31609551..31609575 (25 bp)
TCCAGATCGATGCTGACGGCGCGAC
LOC_Os01g54360
OsAffx.23787.1.S1_at--562--1671Chr01:31608407..31608493 (25 bp)
AGCCGCTAGCGGAAGTGGAACACGA
LOC_Os01g54360
OsAffx.23787.1.S1_at--94--2731Chr01:31607353..31607373 (21 bp)
AAGAAGTCGACGGTCAGTGCCTACC
NONE
OsAffx.23787.1.S1_at--174--2591Chr01:31607299..31607323 (25 bp)
AACGTGAGAAGCTGCACGGCACGGC
NONE
OsAffx.23787.1.S1_at--732--4571Chr01:31607281..31607300 (20 bp)
GCGCAGCGGGTGTGGCCAAAATTCT
NONE
OsAffx.23787.1.S1_at--499--3151Chr01:31606980..31607003 (24 bp)
AATTCTGCTGACGTGGACAACCTAA
NONE
OsAffx.23787.1.S1_at--155--8151Chr01:31606966..31606990 (25 bp)
GGACAACCTAAGCAAGCCAATATCT
NONE
OsAffx.23787.1.S1_at--27--4391Chr01:31606951..31606975 (25 bp)
GCCAATATCTTGTCCCACGGATAAA
NONE
OsAffx.23787.1.S1_at--266--9231Chr01:31606907..31606931 (25 bp)
TCCTACCGAACTCGTGCCGAAATAA
NONE
OsAffx.23787.1.S1_at--64--9171Chr01:31606893..31606917 (25 bp)
TGCCGAAATAACCTACACCAAGAAA
NONE
Target Sequence 
TGTGCCAACCATCTCCAGATCGATGCTGACGGCGCGACGGCGCCCCTTCCCGCCCACTAGCGCCAACGGGGTCGCCGCAC
GCCGCCGGAGCCGCCGCTCGACCCACTCGATGCCTCCGCCGTCGACGTCCCGCGCCCTCCCGCCCGCCGGCCGAAGGGGA
AGAAGGGGAGAGAAAGAGAGAGAAGGCCGACGGGGAGAAGGGCAGCCGCTAGCGGAAGTGGAACACGAGTTCCACCAACT
CCACGCGACCAAGATGGAGGAGCTGCTCCGTCAGGTGGCCACGGCAGTGGCGTCCTCGCTGCAAGGGATAGGCGGGAAGA
AGTCGACGGTCAGTGCCTACCCCATGTGCACGATCGAGAGCGATTGGGTTAACGTGAGAAGCTGCACGGCACGGCGCAGC
GGGTGTGGCCAAAATTCTGCTGACGTGGACAACCTAAGCAAGCCAATATCTTGTCCCACGGATAAAACCTCCTCACTCGT
CAGGCTCCTACCGAACTCGTGCCGAAATAACCTACACCAAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23787.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis