Browse Element(s) Details


OsAffx.11351.1.S1_at

Description tigr:9629.m03446
TID=OsAffx.11351.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3652010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g36460Os.10115.1.S1_at11/111+20567386..20569587Myb-related protein Hv33, putative, expressed
LOC_Os01g36460Os.57514.1.S1_x_at1/111+20567386..20569587Myb-related protein Hv33, putative, expressed
LOC_Os01g36470OsAffx.11348.2.S1_x_at11/111+20572238..20572864expressed protein
LOC_Os01g36470OsAffx.11348.2.S1_s_at11/111+20572238..20572864expressed protein
LOC_Os01g36470OsAffx.11348.1.S1_x_at7/111+20572238..20572864expressed protein
LOC_Os01g36470OsAffx.11348.1.S1_at4/111+20572238..20572864expressed protein
LOC_Os01g36480OsAffx.11349.1.S1_at11/111+20576093..20576875hypothetical protein
LOC_Os01g36490OsAffx.23529.1.S1_at11/111+20578181..20578490hypothetical protein
LOC_Os01g36500OsAffx.719.1.S1_x_at11/111+20582150..20587565Protein kinase domain containing protein
LOC_Os01g36500OsAffx.719.3.S1_at10/111+20582150..20587565Protein kinase domain containing protein
LOC_Os01g36500OsAffx.719.1.S1_s_at8/111+20582150..20587565Protein kinase domain containing protein
LOC_Os01g36500OsAffx.719.4.S1_at1/111+20582150..20587565Protein kinase domain containing protein
LOC_Os01g36500OsAffx.9446.1.S1_at1/111+20582150..20587565Protein kinase domain containing protein
LOC_Os01g36500OsAffx.8277.2.S1_at1/111+20582150..20587565Protein kinase domain containing protein
LOC_Os01g36510OsAffx.9013.1.S1_x_at11/111+20589075..20590880hypothetical protein
LOC_Os01g36520OsAffx.11351.1.S1_at10/111+20592580..20594071hypothetical protein
LOC_Os01g36530NANA1+20602596..20604968transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g36540OsAffx.23530.1.S1_at11/111+20607702..20609411pentatricopeptide, putative, expressed
LOC_Os01g36550OsAffx.21248.1.S1_x_at10/111+20611294..20614312Protein kinase domain containing protein
LOC_Os01g36560OsAffx.2166.1.S1_at11/111+20614702..20617477Integral membrane protein DUF6 containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11351.1.S1_at--319--5691Chr01:20592615..20592639 (25 bp)
GACTAACATAACTCTAGGCCCTGAT
LOC_Os01g36520
OsAffx.11351.1.S1_at--542--6251Chr01:20592637..20592661 (25 bp)
GATGGTTTGCCTGTGAGCTTGTATA
LOC_Os01g36520
OsAffx.11351.1.S1_at--951--6431Chr01:20592706..20592730 (25 bp)
GATCAGCTCTATGAAGGGACCCTAG
LOC_Os01g36520
OsAffx.11351.1.S1_at--925--8091Chr01:20592722..20592746 (25 bp)
GGACCCTAGAGCTATGGAGACTGAA
LOC_Os01g36520
OsAffx.11351.1.S1_at--353--5711NONE
GACTGAACTATGAATTGCCTATAAG
NONE
OsAffx.11351.1.S1_at--987--5591Chr01:20593547..20593571 (25 bp)
GAAATTATTGGCCTCAGAACTAGCC
LOC_Os01g36520
OsAffx.11351.1.S1_at--649--1431Chr01:20593562..20593586 (25 bp)
AGAACTAGCCACTCCTACAGATAAG
LOC_Os01g36520
OsAffx.11351.1.S1_at--1095--2991Chr01:20593913..20593937 (25 bp)
AATGATCCATGCTACAGACTACTTA
LOC_Os01g36520
OsAffx.11351.1.S1_at--572--7392Chr06:27571391..27571827 (25 bp)
GTGAGGGTTCTTTCAATCATCTGTT
NONE
OsAffx.11351.1.S1_at--1038--411Chr01:20593974..20593998 (25 bp)
ATCATCTGTTGAGTGGGTTCCTAGT
LOC_Os01g36520
OsAffx.11351.1.S1_at--233--6691Chr01:20593990..20594014 (25 bp)
GTTCCTAGTTTTGAAAGGCTTCCAT
LOC_Os01g36520
Target Sequence 
GACTAACATAACTCTAGGCCCTGATGGTTTGCCTGTGAGCTTGTATAAGGAATTTTGGAAACAAATTAGAGAGCAGATAA
AGGAAATGGTTGATCAGCTCTATGAAGGGACCCTAGAGCTATGGAGACTGAACTATGAATTGCCTATAAGTGATAGGAAA
TTATTGGCCTCAGAACTAGCCACTCCTACAGATAAGATAGAGAGGAGATTAGAATCTGGAGCTAATGATCCATGCTACAG
ACTACTTAGAAAGAAATATATGAGCAGAGGTGAGGGTTCTTTCAATCATCTGTTGAGTGGGTTCCTAGTTTTGAAAGGCT
TCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11351.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis