Browse Element(s) Details


OsAffx.21248.1.S1_x_at

Description gb:NM_193343.1
DB_XREF= gi:34913769
GEN=OSJNBa0026J14.13
TID=OsAffx.21248.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) protein kinase-like (OSJNBa0026J14.13), mRNA.
PROD=protein kinase-like
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3655010/11Protein kinase domain containing protein
LOC_Os04g510101/11Protein kinase domain containing protein, expressed
LOC_Os04g510301/11Calcium binding EGF domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g36500OsAffx.719.1.S1_x_at11/111+20582150..20587565Protein kinase domain containing protein
LOC_Os01g36500OsAffx.719.3.S1_at10/111+20582150..20587565Protein kinase domain containing protein
LOC_Os01g36500OsAffx.719.1.S1_s_at8/111+20582150..20587565Protein kinase domain containing protein
LOC_Os01g36500OsAffx.719.4.S1_at1/111+20582150..20587565Protein kinase domain containing protein
LOC_Os01g36500OsAffx.9446.1.S1_at1/111+20582150..20587565Protein kinase domain containing protein
LOC_Os01g36500OsAffx.8277.2.S1_at1/111+20582150..20587565Protein kinase domain containing protein
LOC_Os01g36510OsAffx.9013.1.S1_x_at11/111+20589075..20590880hypothetical protein
LOC_Os01g36520OsAffx.11351.1.S1_at10/111+20592580..20594071hypothetical protein
LOC_Os01g36530NANA1+20602596..20604968transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g36540OsAffx.23530.1.S1_at11/111+20607702..20609411pentatricopeptide, putative, expressed
LOC_Os01g36550OsAffx.21248.1.S1_x_at10/111+20611294..20614312Protein kinase domain containing protein
LOC_Os01g36560OsAffx.2166.1.S1_at11/111+20614702..20617477Integral membrane protein DUF6 containing protein
LOC_Os01g36570OsAffx.11352.1.S1_at8/111+20619437..20619733Glycine-rich protein 2, putative
LOC_Os01g36580Os.24515.1.S1_at10/111+20626573..20629314Integral membrane protein DUF6 containing protein, expressed
LOC_Os01g36580Os.24515.2.S1_at2/111+20626573..20629314Integral membrane protein DUF6 containing protein, expressed
LOC_Os01g36590OsAffx.21247.2.S1_s_at11/111+20631731..20637232nodulin, putative
LOC_Os01g36590OsAffx.21247.1.S1_at10/111+20631731..20637232nodulin, putative
LOC_Os01g36590OsAffx.21247.2.S1_at9/111+20631731..20637232nodulin, putative

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009620biological_processresponse to fungi
GO:0005618cellular_componentcell wall
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21248.1.S1_x_at--56--2351Chr01:20613363..20613387 (25 bp)
AAAGACCTGCTATGTGCACCGTGAC
LOC_Os01g36550
OsAffx.21248.1.S1_x_at--925--2811NONE
AAGTTGCAGATTTCGGCTTGGTCAA
NONE
OsAffx.21248.1.S1_x_at--850--4931Chr01:20613526..20613550 (25 bp)
GCTTGGTCAAGCTCGTTCAGCGTAG
LOC_Os01g36550
OsAffx.21248.1.S1_x_at--215--9011Chr01:20613560..20613584 (25 bp)
TGAATGTCTGGCAACTCGTTTGGTT
LOC_Os01g36550
OsAffx.21248.1.S1_x_at--151--5251Chr01:20613685..20613707 (23 bp)
GAATCAGTTCTTGAGCTTCACATGA
LOC_Os01g36550
OsAffx.21248.1.S1_x_at--150--4911Chr01:20613697..20613721 (25 bp)
GCTTCACATGACTACCAAATCCGAT
LOC_Os01g36550
OsAffx.21248.1.S1_x_at--728--3593Chr04:29994440..29994459 (20 bp)
CATTCGGAGTAGTTCTTGCAGAGCT
LOC_Os04g51030
OsAffx.21248.1.S1_x_at--949--1351Chr01:20613748..20613772 (25 bp)
AGAGCTTATTACTGGTCTCCGTGCA
LOC_Os01g36550
OsAffx.21248.1.S1_x_at--722--2511Chr01:20614154..20614178 (25 bp)
AACATTTCGATGTGGTGCCTCAGTG
LOC_Os01g36550
OsAffx.21248.1.S1_x_at--246--7891Chr01:20614210..20614234 (25 bp)
GGTTATGCCGATTTTGGCTCAAATT
LOC_Os01g36550
OsAffx.21248.1.S1_x_at--1001--8311Chr01:20614225..20614249 (25 bp)
GGCTCAAATTCATATGGCTTCCATA
LOC_Os01g36550
Target Sequence 
AAAGACCTGCTATGTGCACCGTGACATCAAAACCAGCAATATTCTGCTAGACAATGGTCTACGAGCTAAAGTTGCAGATT
TCGGCTTGGTCAAGCTCGTTCAGCGTAGTGATGAAGATGAATGTCTGGCAACTCGTTTGGTTGGAACGCCAGGCTACCTT
CCACCAGAATCAGTTCTTGAGCTTCACATGACTACCAAATCCGATGTGTATGCATTCGGAGTAGTTCTTGCAGAGCTTAT
TACTGGTCTCCGTGCACTTGTACGGGACAACAAGGAAGCTAACAAGACAAAATCTCTAATCTCAATCATGAGGAAAGCAT
TCAAACCAGAAGATCTGGAGAGTTCCCTGGAGACAATTGTAGATCCCTACCTGAAGGACAATTACCCCATAGAAGAAGTT
TGCAAGTTGGCAAACATTTCGATGTGGTGCCTCAGTGAGGATCCACTGCACCGCCCTGAAATGAGGGAGGTTATGCCGAT
TTTGGCTCAAATTCATATGGCTTCCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21248.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis