Browse Element(s) Details


OsAffx.21247.2.S1_s_at

Description tigr:9629.m03454
TID=OsAffx.21247.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3659011/11nodulin, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g36540OsAffx.23530.1.S1_at11/111+20607702..20609411pentatricopeptide, putative, expressed
LOC_Os01g36550OsAffx.21248.1.S1_x_at10/111+20611294..20614312Protein kinase domain containing protein
LOC_Os01g36560OsAffx.2166.1.S1_at11/111+20614702..20617477Integral membrane protein DUF6 containing protein
LOC_Os01g36570OsAffx.11352.1.S1_at8/111+20619437..20619733Glycine-rich protein 2, putative
LOC_Os01g36580Os.24515.1.S1_at10/111+20626573..20629314Integral membrane protein DUF6 containing protein, expressed
LOC_Os01g36580Os.24515.2.S1_at2/111+20626573..20629314Integral membrane protein DUF6 containing protein, expressed
LOC_Os01g36590OsAffx.21247.2.S1_s_at11/111+20631731..20637232nodulin, putative
LOC_Os01g36590OsAffx.21247.1.S1_at10/111+20631731..20637232nodulin, putative
LOC_Os01g36590OsAffx.21247.2.S1_at9/111+20631731..20637232nodulin, putative
LOC_Os01g36600Os.9812.1.S1_at10/111+20639797..20641027pentatricopeptide, putative, expressed
LOC_Os01g36610OsAffx.9010.1.S1_at11/111+20641163..20642953pentatricopeptide, putative
LOC_Os01g36620Os.35614.1.S1_at11/111+20644725..20646202Pectate lyase family protein, expressed
LOC_Os01g36630Os.33852.1.S1_at10/111+20649545..20653223jmjC domain containing protein, expressed
LOC_Os01g36640NANA1+20655983..20658700NB-ARC domain containing protein
LOC_Os01g36650OsAffx.21246.2.S1_s_at11/111+20660606..20663457expressed protein
LOC_Os01g36650OsAffx.21246.2.S1_at10/111+20660606..20663457expressed protein
LOC_Os01g36650OsAffx.21246.1.S1_at6/111+20660606..20663457expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21247.2.S1_s_at--362--3871Chr01:20633903..20633927 (25 bp)
CTGTTGGAGTTTCTGTGCTAGCATT
LOC_Os01g36590
OsAffx.21247.2.S1_s_at--177--7291Chr01:20633889..20633913 (25 bp)
GTGCTAGCATTATACCAGGGACCTG
LOC_Os01g36590
OsAffx.21247.2.S1_s_at--394--3471Chr01:20633874..20633898 (25 bp)
CAGGGACCTGATCTGAAGTCTTTTA
LOC_Os01g36590
OsAffx.21247.2.S1_s_at--573--1151Chr01:20633858..20633882 (25 bp)
AGTCTTTTATCAAGCACCACCTTTT
LOC_Os01g36590
OsAffx.21247.2.S1_s_at--406--10351Chr01:20633837..20633861 (25 bp)
TTTTTCCTCACACAAACCGTGTTGG
LOC_Os01g36590
OsAffx.21247.2.S1_s_at--1140--2611Chr01:20633823..20633847 (25 bp)
AACCGTGTTGGTACTCATTCTTCAA
LOC_Os01g36590
OsAffx.21247.2.S1_s_at--255--2971Chr01:20633755..20633779 (25 bp)
AATGTGGGCTCTTTGGGCAGTACTT
LOC_Os01g36590
OsAffx.21247.2.S1_s_at--258--931Chr01:20633637..20633661 (25 bp)
AGGAATACCCGTCTAAGCTACTCAA
LOC_Os01g36590
OsAffx.21247.2.S1_s_at--304--10071Chr01:20633598..20633622 (25 bp)
TAGTCTTCTCGGCTGTTCAATCATT
LOC_Os01g36590
OsAffx.21247.2.S1_s_at--736--10191Chr01:20633519..20633543 (25 bp)
TATAGGCCTTGTTGCCATCATCTAT
LOC_Os01g36590
OsAffx.21247.2.S1_s_at--1094--6611Chr01:20632361..20632385 (25 bp)
GTTGTGGGCCTGTATACTGTTCTCT
LOC_Os01g36590
Target Sequence 
CTGTTGGAGTTTCTGTGCTAGCATTATACCAGGGACCTGATCTGAAGTCTTTTATCAAGCACCACCTTTTTCCTCACACA
AACCGTGTTGGTACTCATTCTTCAAGGAACTGGATACTAGGAATTTTCTTGCAGTTTTTGGCGACTTTAATGTGGGCTCT
TTGGGCAGTACTTCAGGGACCTCTGTTAGAGGAATACCCGTCTAAGCTACTCAACACAACTCTCCAGATAGTCTTCTCGG
CTGTTCAATCATTTTTTATGGCTCTAGTGCTTGAGAGAGACTTTTCAAGATGGAAGCTTGGTTTCGATATAGGCCTTGTT
GCCATCATCTATTGTCATAATAAGCGGAGCGCTGATGGTTGTGGGCCTGTATACTGTTCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21247.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis