Browse Element(s) Details


Os.33852.1.S1_at

Description gb:AK073801.1
DB_XREF= gi:32983824
TID=Os.33852.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33852 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0026J14.21 (OSJNBa0026J14.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033067F23, full insert sequence.
FL= gb:AK073801.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3663010/11jmjC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g36580Os.24515.1.S1_at10/111+20626573..20629314Integral membrane protein DUF6 containing protein, expressed
LOC_Os01g36580Os.24515.2.S1_at2/111+20626573..20629314Integral membrane protein DUF6 containing protein, expressed
LOC_Os01g36590OsAffx.21247.2.S1_s_at11/111+20631731..20637232nodulin, putative
LOC_Os01g36590OsAffx.21247.1.S1_at10/111+20631731..20637232nodulin, putative
LOC_Os01g36590OsAffx.21247.2.S1_at9/111+20631731..20637232nodulin, putative
LOC_Os01g36600Os.9812.1.S1_at10/111+20639797..20641027pentatricopeptide, putative, expressed
LOC_Os01g36610OsAffx.9010.1.S1_at11/111+20641163..20642953pentatricopeptide, putative
LOC_Os01g36620Os.35614.1.S1_at11/111+20644725..20646202Pectate lyase family protein, expressed
LOC_Os01g36630Os.33852.1.S1_at10/111+20649545..20653223jmjC domain containing protein, expressed
LOC_Os01g36640NANA1+20655983..20658700NB-ARC domain containing protein
LOC_Os01g36650OsAffx.21246.2.S1_s_at11/111+20660606..20663457expressed protein
LOC_Os01g36650OsAffx.21246.2.S1_at10/111+20660606..20663457expressed protein
LOC_Os01g36650OsAffx.21246.1.S1_at6/111+20660606..20663457expressed protein
LOC_Os01g36660Os.40947.1.A1_at11/111+20664958..20668746Carboxyl-terminal proteinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0003700molecular_functiontranscription factor activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33852.1.S1_at--909--6471Chr01:20652728..20652752 (25 bp)
GATACTGACTTCATTTCAGCCGAAA
LOC_Os01g36630
Os.33852.1.S1_at--486--4111Chr01:20652748..20652772 (25 bp)
CGAAACTGCTAACCACTTTGTCTAT
LOC_Os01g36630
Os.33852.1.S1_at--689--7151Chr01:20652767..20652791 (25 bp)
GTCTATAATCTCATGTCGATCCGTG
LOC_Os01g36630
Os.33852.1.S1_at--651--3511Chr01:20652778..20652802 (25 bp)
CATGTCGATCCGTGATGTTGCATCA
LOC_Os01g36630
Os.33852.1.S1_at--154--2191Chr01:20652856..20652880 (25 bp)
ACAAAACCGGAGTGCTTTCTCTGAT
LOC_Os01g36630
Os.33852.1.S1_at--500--7711Chr01:20652922..20652946 (25 bp)
GGTGGCGTTGTCAAAGGCATATAAT
LOC_Os01g36630
Os.33852.1.S1_at--722--7051Chr01:20653013..20653037 (25 bp)
GTAACCTGCTTAAAACCTGACTGTA
LOC_Os01g36630
Os.33852.1.S1_at--5--5691Chr01:20653049..20653073 (25 bp)
GACATTATTTCTTTCATGCGTGAGA
LOC_Os01g36630
Os.33852.1.S1_at--84--4672Chr01:20653066..20653090 (25 bp)
GCGTGAGATTCATGGACCTATGGAT
LOC_Os01g36630
Os.33852.1.S1_at--271--731Chr01:20653158..20653182 (25 bp)
ATGTTTGCACCGTTGCATAACCTAT
LOC_Os01g36630
Os.33852.1.S1_at--805--6451NONE
GATACTTGACCACTGTTAAATGCCC
NONE
Target Sequence 
GATACTGACTTCATTTCAGCCGAAACTGCTAACCACTTTGTCTATAATCTCATGTCGATCCGTGATGTTGCATCAAAAAT
GGTATCTACAGAAGCTTTCAATACCGAGAATATTTGTAATATCTCAGAACAAAACCGGAGTGCTTTCTCTGATATCATAA
AAATATTGGAAGAAGAGAGTTTCAGAAGGTTATTGGTGGCGTTGTCAAAGGCATATAATTACATAGACAGAGGACAAAAA
GATTGTCTCAAAATGAAGGATTCAAGTCAGAAGGGTTGTTTGTCAGTAACCTGCTTAAAACCTGACTGTAATGTTGTTGG
TGACATTATTTCTTTCATGCGTGAGATTCATGGACCTATGGATTTGGTAACACTAATTGATAGTGCTCTCTCTGATAGAT
AGTTATAAGCTTACCTGGCACTGTAAACTTATGTTTGCACCGTTGCATAACCTATTTCTTTAGGAACCCTGGATACTTGA
CCACTGTTAAATGCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33852.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis