Browse Element(s) Details


OsAffx.21246.2.S1_s_at

Description tigr:9629.m03460
TID=OsAffx.21246.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3665011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g36590OsAffx.21247.2.S1_s_at11/111+20631731..20637232nodulin, putative
LOC_Os01g36590OsAffx.21247.1.S1_at10/111+20631731..20637232nodulin, putative
LOC_Os01g36590OsAffx.21247.2.S1_at9/111+20631731..20637232nodulin, putative
LOC_Os01g36600Os.9812.1.S1_at10/111+20639797..20641027pentatricopeptide, putative, expressed
LOC_Os01g36610OsAffx.9010.1.S1_at11/111+20641163..20642953pentatricopeptide, putative
LOC_Os01g36620Os.35614.1.S1_at11/111+20644725..20646202Pectate lyase family protein, expressed
LOC_Os01g36630Os.33852.1.S1_at10/111+20649545..20653223jmjC domain containing protein, expressed
LOC_Os01g36640NANA1+20655983..20658700NB-ARC domain containing protein
LOC_Os01g36650OsAffx.21246.2.S1_s_at11/111+20660606..20663457expressed protein
LOC_Os01g36650OsAffx.21246.2.S1_at10/111+20660606..20663457expressed protein
LOC_Os01g36650OsAffx.21246.1.S1_at6/111+20660606..20663457expressed protein
LOC_Os01g36660Os.40947.1.A1_at11/111+20664958..20668746Carboxyl-terminal proteinase, putative, expressed
LOC_Os01g36670Os.27582.1.A1_at11/111+20678376..20691220expressed protein
LOC_Os01g36670Os.27582.1.A1_a_at11/111+20678376..20691220expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21246.2.S1_s_at--748--8551Chr01:20663276..20663300 (25 bp)
TGGAGTTCATTTCAGCAGGATTGCA
LOC_Os01g36650
OsAffx.21246.2.S1_s_at--399--1011Chr01:20663260..20663284 (25 bp)
AGGATTGCAGCAGGACACCGTTTGT
LOC_Os01g36650
OsAffx.21246.2.S1_s_at--223--6871Chr01:20663241..20663265 (25 bp)
GTTTGTCCCTTGCTGATGGGAGCAT
LOC_Os01g36650
OsAffx.21246.2.S1_s_at--890--1431Chr01:20663208..20663232 (25 bp)
AGAACGATCGACAAGCCACACTCGG
LOC_Os01g36650
OsAffx.21246.2.S1_s_at--430--3411Chr01:20661571..20661595 (25 bp)
CAGCAGCTGAGAGCATTTATTGGTA
LOC_Os01g36650
OsAffx.21246.2.S1_s_at--524--8591Chr01:20661551..20661575 (25 bp)
TGGTATGCAGACACTCTTCATGCTG
LOC_Os01g36650
OsAffx.21246.2.S1_s_at--461--3651Chr01:20661536..20661560 (25 bp)
CTTCATGCTGCATCATCAAGAACTT
LOC_Os01g36650
OsAffx.21246.2.S1_s_at--569--10671Chr01:20661513..20661537 (25 bp)
TTCCATTTGGTTGCTGGGAGCACAA
LOC_Os01g36650
OsAffx.21246.2.S1_s_at--840--6251Chr01:20660985..20661009 (25 bp)
GATGGGAGCATTCAACAGTGGTCAA
LOC_Os01g36650
OsAffx.21246.2.S1_s_at--1112--3451Chr01:20660970..20660994 (25 bp)
CAGTGGTCAACTGGTCAAGTATCCA
LOC_Os01g36650
OsAffx.21246.2.S1_s_at--357--7831Chr01:20660958..20660982 (25 bp)
GGTCAAGTATCCAGGATTCCTAAAG
LOC_Os01g36650
Target Sequence 
TGGAGTTCATTTCAGCAGGATTGCAGCAGGACACCGTTTGTCCCTTGCTGATGGGAGCATGTGGTGTGAGAACGATCGAC
AAGCCACACTCGGCACCTAACATAACAACAGCAGCTGAGAGCATTTATTGGTATGCAGACACTCTTCATGCTGCATCATC
AAGAACTTCCATTTGGTTGCTGGGAGCACAACAAAAGCTATCCTTCCAGAATGCAGAGGATGGGAGCATTCAACAGTGGT
CAACTGGTCAAGTATCCAGGATTCCTAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21246.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis