Browse Element(s) Details


OsAffx.21246.2.S1_at

Description tigr:9629.m03460
TID=OsAffx.21246.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3665010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g36590OsAffx.21247.2.S1_s_at11/111+20631731..20637232nodulin, putative
LOC_Os01g36590OsAffx.21247.1.S1_at10/111+20631731..20637232nodulin, putative
LOC_Os01g36590OsAffx.21247.2.S1_at9/111+20631731..20637232nodulin, putative
LOC_Os01g36600Os.9812.1.S1_at10/111+20639797..20641027pentatricopeptide, putative, expressed
LOC_Os01g36610OsAffx.9010.1.S1_at11/111+20641163..20642953pentatricopeptide, putative
LOC_Os01g36620Os.35614.1.S1_at11/111+20644725..20646202Pectate lyase family protein, expressed
LOC_Os01g36630Os.33852.1.S1_at10/111+20649545..20653223jmjC domain containing protein, expressed
LOC_Os01g36640NANA1+20655983..20658700NB-ARC domain containing protein
LOC_Os01g36650OsAffx.21246.2.S1_s_at11/111+20660606..20663457expressed protein
LOC_Os01g36650OsAffx.21246.2.S1_at10/111+20660606..20663457expressed protein
LOC_Os01g36650OsAffx.21246.1.S1_at6/111+20660606..20663457expressed protein
LOC_Os01g36660Os.40947.1.A1_at11/111+20664958..20668746Carboxyl-terminal proteinase, putative, expressed
LOC_Os01g36670Os.27582.1.A1_at11/111+20678376..20691220expressed protein
LOC_Os01g36670Os.27582.1.A1_a_at11/111+20678376..20691220expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21246.2.S1_at--393--2151NONE
ACACTCGGCACCTAACATAACAACA
NONE
OsAffx.21246.2.S1_at--1066--8051Chr01:20661021..20661521 (25 bp)
GGAGCACAACAAAAGCTATCCTTCC
LOC_Os01g36650
OsAffx.21246.2.S1_at--351--5131Chr01:20661018..20661518 (25 bp)
GCACAACAAAAGCTATCCTTCCAGA
LOC_Os01g36650
OsAffx.21246.2.S1_at--933--2191Chr01:20661016..20661516 (25 bp)
ACAACAAAAGCTATCCTTCCAGAAT
LOC_Os01g36650
OsAffx.21246.2.S1_at--1012--2451Chr01:20661014..20661485 (25 bp)
AACAAAAGCTATCCTTCCAGAATGC
LOC_Os01g36650
OsAffx.21246.2.S1_at--5--3292Chr01:20661012..20661032 (21 bp)
CAAAAGCTATCCTTCCAGAATGCAG
LOC_Os01g36650
OsAffx.21246.2.S1_at--558--2432Chr01:20661011..20661032 (22 bp)
AAAAGCTATCCTTCCAGAATGCAGA
LOC_Os01g36650
OsAffx.21246.2.S1_at--418--2352Chr01:20661010..20661032 (23 bp)
AAAGCTATCCTTCCAGAATGCAGAG
LOC_Os01g36650
OsAffx.21246.2.S1_at--154--2712Chr01:20661009..20661032 (24 bp)
AAGCTATCCTTCCAGAATGCAGAGG
LOC_Os01g36650
OsAffx.21246.2.S1_at--1086--1552Chr01:20661008..20661032 (25 bp)
AGCTATCCTTCCAGAATGCAGAGGA
LOC_Os01g36650
OsAffx.21246.2.S1_at--981--3691Chr01:20661006..20661030 (25 bp)
CTATCCTTCCAGAATGCAGAGGATG
LOC_Os01g36650
Target Sequence 
ACACTCGGCACCTAACATAACAACAGCAGCTGAGAGCATTTATTGGTATGCAGACACTCTTCATGCTGCATCATCAAGAA
CTTCCATTTGGTTGCTGGGAGCACAACAAAAGCTATCCTTCCAGAATGCAGAGGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21246.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis