Browse Element(s) Details


Os.52751.1.S1_at

Description gb:AK069074.1
DB_XREF= gi:32979098
TID=Os.52751.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52751 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023005F15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023005F15, full insert sequence.
FL= gb:AK069074.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3272011/11early-responsive to dehydration protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32680Os.50941.1.S1_at11/115+19047184..19052799pale cress protein, putative, expressed
LOC_Os05g32690NANA5+19054108..19054428hypothetical protein
LOC_Os05g32700NANA5+19065512..19069967retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g32710Os.25202.1.S1_at10/115+19071827..19074457isoamylase-type starch debranching enzyme ISO2, putative, expressed
LOC_Os05g32720Os.52751.1.S1_at11/115+19076997..19082958early-responsive to dehydration protein, putative, expressed
LOC_Os05g32730OsAffx.27123.1.S1_at11/115+19083431..19085092Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os05g32740Os.11575.4.S1_x_at11/115+19089342..19091244transposon protein, putative, Pong sub-class
LOC_Os05g32740Os.11575.2.S1_a_at10/115+19089342..19091244transposon protein, putative, Pong sub-class
LOC_Os05g32740Os.11575.3.S1_x_at8/115+19089342..19091244transposon protein, putative, Pong sub-class
LOC_Os05g32750OsAffx.20858.1.S1_x_at10/115+19092111..19092868hypothetical protein
LOC_Os05g32750OsAffx.20858.4.S1_x_at9/115+19092111..19092868hypothetical protein
LOC_Os05g32760OsAffx.14927.1.S1_at11/115+19095361..19100596bZIP protein, putative, expressed
LOC_Os05g32760Os.47700.1.A1_at11/115+19095361..19100596bZIP protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52751.1.S1_at--545--1331Chr05:19082297..19082321 (25 bp)
AGAGTGGCGCGCAATTCTGGCCAGA
LOC_Os05g32720
Os.52751.1.S1_at--806--2271Chr05:19082360..19082384 (25 bp)
AAATCCTCCTGTTGGGACTGCTGAG
LOC_Os05g32720
Os.52751.1.S1_at--913--5971Chr05:19082398..19082422 (25 bp)
GAGAAATCCACTGTTGCTCTTCTTC
LOC_Os05g32720
Os.52751.1.S1_at--810--8751Chr05:19082430..19082454 (25 bp)
TGTACTGTCCATATGGTTCCACTAT
LOC_Os05g32720
Os.52751.1.S1_at--349--6691Chr05:19082445..19082469 (25 bp)
GTTCCACTATGTTTGCAAGGGCCGC
LOC_Os05g32720
Os.52751.1.S1_at--1094--8911Chr05:19082472..19082496 (25 bp)
TGAGCCAGCGTTTATAAAGTTCCCC
LOC_Os05g32720
Os.52751.1.S1_at--190--3011Chr05:19082641..19082665 (25 bp)
AATGACCCAACCCTGAATTTGAGAG
LOC_Os05g32720
Os.52751.1.S1_at--854--7971Chr05:19082676..19082700 (25 bp)
GGATGCATATGTGCACCCAGTGTTC
LOC_Os05g32720
Os.52751.1.S1_at--626--4391Chr05:19082771..19082795 (25 bp)
GCCAATCGCGAATGAACACACCAGT
LOC_Os05g32720
Os.52751.1.S1_at--173--1351Chr05:19082835..19082859 (25 bp)
AGAGTTCAGTCGGATGGCTCCTACC
LOC_Os05g32720
Os.52751.1.S1_at--300--8331Chr05:19082850..19082874 (25 bp)
GGCTCCTACCTGAAGCTTGATTTTT
LOC_Os05g32720
Target Sequence 
AGAGTGGCGCGCAATTCTGGCCAGATGTCCAAAGACGACTGGTTATAGCATTGATAGTATCACAAATCCTCCTGTTGGGA
CTGCTGAGCACGCAGGAAGCAGAGAAATCCACTGTTGCTCTTCTTCCTCTTCCTGTACTGTCCATATGGTTCCACTATGT
TTGCAAGGGCCGCTTTGAGCCAGCGTTTATAAAGTTCCCCCTGCAGGATGCAATGGTAAAGGATACACTGGAACGGGCAA
ATGACCCAACCCTGAATTTGAGAGAGTACCTGAAGGATGCATATGTGCACCCAGTGTTCCAAAAAAATGACATATATGAG
TTTGCTGGCATCGACGAGGAAGAGAAGAACCCCATGGTTGCAACGAAGCGCCAATCGCGAATGAACACACCAGTAGATAG
CAAGTTCAATTCCAGTTCTGGCACTAATGAAGGAGAGTTCAGTCGGATGGCTCCTACCTGAAGCTTGATTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52751.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis