Browse Element(s) Details


Os.25202.1.S1_at

Description gb:CA764197
DB_XREF= gi:27546100
DB_XREF=AF53-Rpf_02_J20_T7_070.ab1
CLONE=C0000620
TID=Os.25202.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.25202 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_171830.1 (A.thaliana) putative isoamylase (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3271010/11isoamylase-type starch debranching enzyme ISO2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32680Os.50941.1.S1_at11/115+19047184..19052799pale cress protein, putative, expressed
LOC_Os05g32690NANA5+19054108..19054428hypothetical protein
LOC_Os05g32700NANA5+19065512..19069967retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g32710Os.25202.1.S1_at10/115+19071827..19074457isoamylase-type starch debranching enzyme ISO2, putative, expressed
LOC_Os05g32720Os.52751.1.S1_at11/115+19076997..19082958early-responsive to dehydration protein, putative, expressed
LOC_Os05g32730OsAffx.27123.1.S1_at11/115+19083431..19085092Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os05g32740Os.11575.4.S1_x_at11/115+19089342..19091244transposon protein, putative, Pong sub-class
LOC_Os05g32740Os.11575.2.S1_a_at10/115+19089342..19091244transposon protein, putative, Pong sub-class
LOC_Os05g32740Os.11575.3.S1_x_at8/115+19089342..19091244transposon protein, putative, Pong sub-class
LOC_Os05g32750OsAffx.20858.1.S1_x_at10/115+19092111..19092868hypothetical protein
LOC_Os05g32750OsAffx.20858.4.S1_x_at9/115+19092111..19092868hypothetical protein
LOC_Os05g32760OsAffx.14927.1.S1_at11/115+19095361..19100596bZIP protein, putative, expressed
LOC_Os05g32760Os.47700.1.A1_at11/115+19095361..19100596bZIP protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0005983biological_processstarch catabolism
GO:0010021biological_processamylopectin biosynthesis
GO:0004556molecular_functionalpha-amylase activity
GO:0019156molecular_functionisoamylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25202.1.S1_at--916--7911Chr05:19072339..19072363 (25 bp)
GGTTGGGATGATCCTACCAGCAACT
LOC_Os05g32710
Os.25202.1.S1_at--1022--1711Chr05:19072324..19072348 (25 bp)
ACCAGCAACTTTCTTTGCATGCACA
LOC_Os05g32710
Os.25202.1.S1_at--482--4611Chr05:19072257..19072281 (25 bp)
GCGACCTGTACATCTGTTTCAATGC
LOC_Os05g32710
Os.25202.1.S1_at--105--3411Chr05:19072194..19072218 (25 bp)
CAGAAGGATCCGTGTGGTTGCGCTT
LOC_Os05g32710
Os.25202.1.S1_at--991--4931Chr05:19072153..19072177 (25 bp)
GCATTTCCAGGTTTCTTTGCAACCG
LOC_Os05g32710
Os.25202.1.S1_at--721--10271Chr05:19072138..19072162 (25 bp)
TTTGCAACCGAATCTAATCCCAAGG
LOC_Os05g32710
Os.25202.1.S1_at--26--10151Chr05:19072095..19072119 (25 bp)
TATCCTCTTATCATGTGGAAGCGCA
LOC_Os05g32710
Os.25202.1.S1_at--751--1651Chr05:19072076..19072100 (25 bp)
AGCGCATACTTGTGTTCTATTTGAA
LOC_Os05g32710
Os.25202.1.S1_at--82--371Chr05:19072052..19072076 (25 bp)
ATCAAAGAGCGCTCTTGCCTAGTTT
LOC_Os05g32710
Os.25202.1.S1_at--83--5551Chr05:19071963..19071987 (25 bp)
GAAACCTGAGGTCCCAATAAGTTGT
LOC_Os05g32710
Os.25202.1.S1_at--405--9911NONE
TACTCCTATACAGGTACCCTCATGG
NONE
Target Sequence 
GGTTGGGATGATCCTACCAGCAACTTTCTTTGCATGCACATAAATGCAGAGGTAGATGAAATGGCGGCAGATTCGGTCAG
ANGCGACCTGTACATCTGTTTCAATGCAAACGAGGAATCAGTGAGTGCTGCCTTGCNTGCTCTTGCAGAAGGATCCGTGT
GGTTGCGCTTGGTNGACACATCNCTTGCATTTCCAGGTTTCTTTGCAACCGAATCTAATCCCAAGGTGCAACAAGTGCCA
GGATTATCCTCTTATCATGTGGAAGCGCATACTTGTGTTCTATTTGAATCAAAGAGCGCTCTTGCCTAGTTTNTGCAGTC
AAAATAAGGATCNCAAACCTNTGATAAGTACAAATTTTTGNGTATATCTACAGTCAGAAACCTGAGGTCCCAATAAGTTG
TAGTGGTTGNATATGAGAATGNTAATGATAATAAANGANTGNATCATTTTNCAGATGGATGGTACTCCTATACAGGTACC
CTCATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25202.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis