Browse Element(s) Details


OsAffx.27125.1.S1_at

Description tigr:9633.m03007
TID=OsAffx.27125.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3278011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32760OsAffx.14927.1.S1_at11/115+19095361..19100596bZIP protein, putative, expressed
LOC_Os05g32760Os.47700.1.A1_at11/115+19095361..19100596bZIP protein, putative, expressed
LOC_Os05g32770OsAffx.27124.1.S1_at7/115+19111120..19113929hypothetical protein
LOC_Os05g32770OsAffx.24473.1.S1_at6/115+19111120..19113929hypothetical protein
LOC_Os05g32780OsAffx.27125.1.S1_at11/115+19120545..19121846hypothetical protein
LOC_Os05g32790OsAffx.14928.1.S1_at11/115+19124913..19125310hypothetical protein
LOC_Os05g32800OsAffx.4498.1.S1_at11/115+19130537..19131184hypothetical protein
LOC_Os05g32810OsAffx.14929.1.S1_x_at11/115+19134093..19135953expressed protein
LOC_Os05g32810Os.21778.1.S1_at11/115+19134093..19135953expressed protein
LOC_Os05g32820Os.18513.1.S1_at11/115+19138973..19141184Peptide-N4-asparagine amidase A, putative, expressed
LOC_Os05g32830OsAffx.4499.1.S1_at11/115+19143880..19145999hypothetical protein
LOC_Os05g32830OsAffx.71.1.S1_x_at2/115+19143880..19145999hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27125.1.S1_at--175--6331Chr05:19120575..19120599 (25 bp)
GATCCAAGCACCTCCTTCTTTTGGA
LOC_Os05g32780
OsAffx.27125.1.S1_at--862--2711Chr05:19120580..19120604 (25 bp)
AAGCACCTCCTTCTTTTGGAGCTCA
LOC_Os05g32780
OsAffx.27125.1.S1_at--378--4291Chr05:19120585..19120607 (23 bp)
CCTCCTTCTTTTGGAGCTCAGAGAA
LOC_Os05g32780
OsAffx.27125.1.S1_at--726--4311Chr05:19120588..19121044 (25 bp)
CCTTCTTTTGGAGCTCAGAGAATAG
LOC_Os05g32780
OsAffx.27125.1.S1_at--986--1471Chr05:19121341..19121365 (25 bp)
AGAATAGTGGCTGCATGGCCTTCTC
LOC_Os05g32780
OsAffx.27125.1.S1_at--984--271Chr05:19121344..19121368 (25 bp)
ATAGTGGCTGCATGGCCTTCTCGAG
LOC_Os05g32780
OsAffx.27125.1.S1_at--829--4751Chr05:19121350..19121374 (25 bp)
GCTGCATGGCCTTCTCGAGGATGGT
LOC_Os05g32780
OsAffx.27125.1.S1_at--840--3491Chr05:19121354..19121378 (25 bp)
CATGGCCTTCTCGAGGATGGTTGGT
LOC_Os05g32780
OsAffx.27125.1.S1_at--350--831Chr05:19121406..19121430 (25 bp)
ATGGACCGTTGGCACTCCCTCGTCG
LOC_Os05g32780
OsAffx.27125.1.S1_at--915--3351Chr05:19121448..19121472 (25 bp)
CACCGTGGTTACAGCCTCGTGCAGA
LOC_Os05g32780
OsAffx.27125.1.S1_at--401--10471Chr05:19121456..19121480 (25 bp)
TTACAGCCTCGTGCAGACGGGCAAG
LOC_Os05g32780
Target Sequence 
GATCCAAGCACCTCCTTCTTTTGGAGCTCAGAGAATAGTGGCTGCATGGCCTTCTCGAGGATGGTTGGTGGGCTTGAGCT
CGTCGGCTCCCTCGCCATGGACCGTTGGCACTCCCTCGTCGACTCGTCATCGACCTCCCACCGTGGTTACAGCCTCGTGC
AGACGGGCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27125.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis