Browse Element(s) Details


OsAffx.71.1.S1_x_at

Description gb:NM_197159.1
DB_XREF= gi:37535677
TID=OsAffx.71.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0041P03.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g352704/11hypothetical protein
LOC_Os05g328302/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35230Os.46057.1.S1_at11/1110+18494070..18495721Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35230Os.46127.1.S1_x_at3/1110+18494070..18495721Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35230Os.46382.2.S1_x_at2/1110+18494070..18495721Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35240Os.46899.1.S1_at11/1110+18503780..18506439Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35240Os.46127.1.S1_x_at8/1110+18503780..18506439Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35240Os.46382.2.S1_x_at2/1110+18503780..18506439Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35250Os.20281.1.S1_at11/1110+18508136..18513597hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os10g35260Os.46127.1.S1_x_at11/1110+18517223..18519477Rf1 protein, mitochondrial precursor, putative
LOC_Os10g35260Os.46127.1.S1_at10/1110+18517223..18519477Rf1 protein, mitochondrial precursor, putative
LOC_Os10g35260Os.46382.2.S1_x_at2/1110+18517223..18519477Rf1 protein, mitochondrial precursor, putative
LOC_Os10g35270OsAffx.71.1.S1_at5/1110+18520584..18520868hypothetical protein
LOC_Os10g35270OsAffx.71.1.S1_x_at4/1110+18520584..18520868hypothetical protein
LOC_Os10g35280Os.46653.1.S1_at11/1110+18522637..18527636Uncharacterised protein family containing protein, expressed
LOC_Os10g35290Os.46652.1.S1_at11/1110+18528183..18538046DNA-directed RNA polymerase, beta subunit family protein, expressed
LOC_Os10g35294NANA10+18540336..18543271fiber protein Fb34, putative, expressed
LOC_Os10g35300Os.55986.1.S1_x_at11/1110+18543925..18545407Dof domain, zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.71.1.S1_x_at--317--10092Chr05:19144047..19144070 (24 bp)
TAGGCGCTGGAGTGCTACTTCGAGC
LOC_Os05g32830
OsAffx.71.1.S1_x_at--758--8552Chr05:19144053..19144077 (25 bp)
TGGAGTGCTACTTCGAGCTCGCCGT
LOC_Os05g32830
OsAffx.71.1.S1_x_at--1093--4131Chr10:18520855..18520879 (25 bp)
CGCTGTGCTCGATGGTGGCGAGGCA
NONE
OsAffx.71.1.S1_x_at--548--5991Chr10:18520669..18520693 (25 bp)
GAGACGTCGGCGTGGCGATAGCGCG
LOC_Os10g35270
OsAffx.71.1.S1_x_at--841--5791Chr10:18520626..18520650 (25 bp)
GACGCTCAAGGGATCGAAGCCTCTC
LOC_Os10g35270
OsAffx.71.1.S1_x_at--831--9711Chr10:18520621..18520645 (25 bp)
TCAAGGGATCGAAGCCTCTCAAGAA
LOC_Os10g35270
OsAffx.71.1.S1_x_at--352--1691Chr10:18520609..18520633 (25 bp)
AGCCTCTCAAGAAGGCGGCGCGCCG
LOC_Os10g35270
OsAffx.71.1.S1_x_at--113--9911Chr10:18520506..18520530 (25 bp)
TACTACATGGCGGTTCCGGCCAACG
NONE
OsAffx.71.1.S1_x_at--41--3911Chr10:18520490..18520514 (25 bp)
CGGCCAACGGAGAGCTCGCCGAGCT
NONE
OsAffx.71.1.S1_x_at--382--4251Chr10:18520463..18520487 (25 bp)
CCGGGCTGCAGCAGAGGCTCGTCCA
NONE
OsAffx.71.1.S1_x_at--898--1791Chr10:18520434..18520458 (25 bp)
ACCCCATTGGAGAACATCCTGCAGC
NONE
Target Sequence 
TAGGCGCTGGAGTGCTACTTCGAGCTCGCCGTCGCCGGAGGGAGGCCGCCGGCGCTGTGCTCGATGGTGGCGAGGCAGGT
GAGCCTGGACTACGGCGACGTGCGCGCCGCGCTGGAGGCCCCCGAGCTGCGGCGGCAGCACGCCGACCACCGGCAGTGGG
CGGCGCACGCGGAGGCGAAGGCGGCCTACTTCGCCGCCGAGGCGTGCCTCCGGGCGGCGCGCGAGCGGCGTGCCGAGGGA
GACGTCGGCGTGGCGATAGCGCGGCTGAGGCAGGCGGCGGCGACGCTCAAGGGATCGAAGCCTCTCAAGAAGGCGGCGCG
CCGGTGCACGCCGCCGCCAAGTGGCTGAAGCGGGAGGTGGAGGCCGAGCTCGCCGGCGCCGAGCACGACAACGGCATGAT
CTACTACATGGCGGTTCCGGCCAACGGAGAGCTCGCCGAGCTGCCCGGGCTGCAGCAGAGGCTCGTCCAGCCCACCCCAT
TGGAGAACATCCTGCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.71.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis