Browse Element(s) Details


Os.46899.1.S1_at

Description gb:AK102771.1
DB_XREF= gi:32987980
TID=Os.46899.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46899 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative chloroplast RNA processing protein (OSJNBa0041P03.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033107G16, full insert sequence.
FL= gb:AK102771.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3524011/11Rf1 protein, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35210Os.46654.1.S1_at10/1110+18478183..18482380expressed protein
LOC_Os10g35220Os.15361.1.S1_at11/1110+18484012..18490074KH domain containing protein, expressed
LOC_Os10g35220Os.46382.1.S1_at9/1110+18484012..18490074KH domain containing protein, expressed
LOC_Os10g35220Os.46382.2.S2_x_at7/1110+18484012..18490074KH domain containing protein, expressed
LOC_Os10g35220Os.46382.4.S1_x_at3/1110+18484012..18490074KH domain containing protein, expressed
LOC_Os10g35230Os.46057.1.S1_at11/1110+18494070..18495721Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35230Os.46127.1.S1_x_at3/1110+18494070..18495721Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35230Os.46382.2.S1_x_at2/1110+18494070..18495721Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35240Os.46899.1.S1_at11/1110+18503780..18506439Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35240Os.46127.1.S1_x_at8/1110+18503780..18506439Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35240Os.46382.2.S1_x_at2/1110+18503780..18506439Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35250Os.20281.1.S1_at11/1110+18508136..18513597hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os10g35260Os.46127.1.S1_x_at11/1110+18517223..18519477Rf1 protein, mitochondrial precursor, putative
LOC_Os10g35260Os.46127.1.S1_at10/1110+18517223..18519477Rf1 protein, mitochondrial precursor, putative
LOC_Os10g35260Os.46382.2.S1_x_at2/1110+18517223..18519477Rf1 protein, mitochondrial precursor, putative
LOC_Os10g35270OsAffx.71.1.S1_at5/1110+18520584..18520868hypothetical protein
LOC_Os10g35270OsAffx.71.1.S1_x_at4/1110+18520584..18520868hypothetical protein
LOC_Os10g35280Os.46653.1.S1_at11/1110+18522637..18527636Uncharacterised protein family containing protein, expressed
LOC_Os10g35290Os.46652.1.S1_at11/1110+18528183..18538046DNA-directed RNA polymerase, beta subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46899.1.S1_at--973--10291Chr10:18503975..18503999 (25 bp)
TTTCCCTGAAAAATACGAGGCTTCT
LOC_Os10g35240
Os.46899.1.S1_at--540--1831Chr10:18503961..18503985 (25 bp)
ACGAGGCTTCTATAGAATCTTTGAA
LOC_Os10g35240
Os.46899.1.S1_at--1078--5211Chr10:18503947..18503971 (25 bp)
GAATCTTTGAACTGCTTCGAAGCTT
LOC_Os10g35240
Os.46899.1.S1_at--604--4891Chr10:18503926..18503950 (25 bp)
GCTTTTTGCAGCTTTGAAGTTCTGA
LOC_Os10g35240
Os.46899.1.S1_at--963--8211Chr10:18503898..18503922 (25 bp)
GGAATTCTTTTCTACTACACTCTAC
LOC_Os10g35240
Os.46899.1.S1_at--1158--9871Chr10:18503886..18503910 (25 bp)
TACTACACTCTACAGTTGTACTAGA
LOC_Os10g35240
Os.46899.1.S1_at--915--10031Chr10:18503865..18503889 (25 bp)
TAGAGGAGGTATCTTTTCTCTGTTT
LOC_Os10g35240
Os.46899.1.S1_at--152--7451Chr10:18503840..18503864 (25 bp)
GTGTAAATAGCAAGCAGATCACCTC
LOC_Os10g35240
Os.46899.1.S1_at--349--6451Chr10:18503824..18503848 (25 bp)
GATCACCTCATGTCTGTTTTAGTTC
LOC_Os10g35240
Os.46899.1.S1_at--1034--7173Chr04:13748997..13749095 (24 bp)
GTCTGTTTTAGTTCATGTTAACCAA
NONE
Os.46899.1.S1_at--580--6731Chr10:18503803..18503827 (25 bp)
GTTCATGTTAACCAAGAGACTATAA
LOC_Os10g35240
Target Sequence 
TTTCCCTGAAAAATACGAGGCTTCTATAGAATCTTTGAACTGCTTCGAAGCTTTTTGCAGCTTTGAAGTTCTGAGTTGGA
ATTCTTTTCTACTACACTCTACAGTTGTACTAGAGGAGGTATCTTTTCTCTGTTTGTGTAAATAGCAAGCAGATCACCTC
ATGTCTGTTTTAGTTCATGTTAACCAAGAGACTATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46899.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis