Browse Element(s) Details


Os.46057.1.S1_at

Description gb:AK101819.1
DB_XREF= gi:32987028
TID=Os.46057.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.46057 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative chloroplast RNA processing protein (OSJNBa0041P03.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033067E15, full insert sequence.
FL= gb:AK101819.1 gb:AK059574.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3523011/11Rf1 protein, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35200Os.27667.2.S1_at11/1110+18469134..18476453Katanin p80 WD40-containing subunit B1 homolog 1, putative, expressed
LOC_Os10g35200Os.27667.2.S1_x_at11/1110+18469134..18476453Katanin p80 WD40-containing subunit B1 homolog 1, putative, expressed
LOC_Os10g35200Os.27667.1.S1_at10/1110+18469134..18476453Katanin p80 WD40-containing subunit B1 homolog 1, putative, expressed
LOC_Os10g35210Os.46654.1.S1_at10/1110+18478183..18482380expressed protein
LOC_Os10g35220Os.15361.1.S1_at11/1110+18484012..18490074KH domain containing protein, expressed
LOC_Os10g35220Os.46382.1.S1_at9/1110+18484012..18490074KH domain containing protein, expressed
LOC_Os10g35220Os.46382.2.S2_x_at7/1110+18484012..18490074KH domain containing protein, expressed
LOC_Os10g35220Os.46382.4.S1_x_at3/1110+18484012..18490074KH domain containing protein, expressed
LOC_Os10g35230Os.46057.1.S1_at11/1110+18494070..18495721Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35230Os.46127.1.S1_x_at3/1110+18494070..18495721Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35230Os.46382.2.S1_x_at2/1110+18494070..18495721Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35240Os.46899.1.S1_at11/1110+18503780..18506439Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35240Os.46127.1.S1_x_at8/1110+18503780..18506439Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35240Os.46382.2.S1_x_at2/1110+18503780..18506439Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35250Os.20281.1.S1_at11/1110+18508136..18513597hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os10g35260Os.46127.1.S1_x_at11/1110+18517223..18519477Rf1 protein, mitochondrial precursor, putative
LOC_Os10g35260Os.46127.1.S1_at10/1110+18517223..18519477Rf1 protein, mitochondrial precursor, putative
LOC_Os10g35260Os.46382.2.S1_x_at2/1110+18517223..18519477Rf1 protein, mitochondrial precursor, putative
LOC_Os10g35270OsAffx.71.1.S1_at5/1110+18520584..18520868hypothetical protein
LOC_Os10g35270OsAffx.71.1.S1_x_at4/1110+18520584..18520868hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46057.1.S1_at--554--6771Chr10:18494550..18494574 (25 bp)
GTTACTTGTAACTTGCTGATGGATT
LOC_Os10g35230
Os.46057.1.S1_at--497--3151Chr10:18494481..18494505 (25 bp)
AATTCTATGACCAAGTGTGGCCTAA
LOC_Os10g35230
Os.46057.1.S1_at--892--6191Chr10:18494371..18494395 (25 bp)
GATGGTATGGAACGGTATCCAACCT
LOC_Os10g35230
Os.46057.1.S1_at--507--3971Chr10:18494359..18494383 (25 bp)
CGGTATCCAACCTAATCATCATGTA
LOC_Os10g35230
Os.46057.1.S1_at--435--9271Chr10:18494245..18494269 (25 bp)
TCCGAATGCAGTGAACTACAGAACA
LOC_Os10g35230
Os.46057.1.S1_at--322--1431Chr10:18494226..18494250 (25 bp)
AGAACAGTCATAGATGTACTCTGCA
LOC_Os10g35230
Os.46057.1.S1_at--971--271Chr10:18494217..18494241 (25 bp)
ATAGATGTACTCTGCAAGCTAGGCA
LOC_Os10g35230
Os.46057.1.S1_at--850--6071Chr10:18494192..18494216 (25 bp)
GAGTATACGATGCAGTGCTTACCTT
LOC_Os10g35230
Os.46057.1.S1_at--977--8111Chr10:18494148..18494172 (25 bp)
GGACTAACCCCTGACATCATTGTAT
LOC_Os10g35230
Os.46057.1.S1_at--793--6811Chr10:18494127..18494151 (25 bp)
GTATATACCCCCCTAATTCATGGTT
LOC_Os10g35230
Os.46057.1.S1_at--290--10531Chr10:18494111..18494135 (25 bp)
TTCATGGTTTTTGTACCTGTGACAA
LOC_Os10g35230
Target Sequence 
GTTACTTGTAACTTGCTGATGGATTATCTTTGCAAGAACAGAAGATGCACGGAAGCTAGAAAGATTTTCAATTCTATGAC
CAAGTGTGGCCTAAAGCCTGATATTACTACCTATTGTACCCTGCTTCAGGGGTATGCTACCAAAGGAGCCCTTGTTGAGA
TGCATGATCTCCTGGATTTGATGGTATGGAACGGTATCCAACCTAATCATCATGTATTCAACATTCTAATATGTGCATAC
GCTAAACAAGAAAAAGTAGATGAGGCGATGCTTGTATTCAGCAAAATGAGGCAGCAAGGATTGAGTCCGAATGCAGTGAA
CTACAGAACAGTCATAGATGTACTCTGCAAGCTAGGCAGAGTATACGATGCAGTGCTTACCTTAAAGCAGATGATCAATG
AAGGACTAACCCCTGACATCATTGTATATACCCCCCTAATTCATGGTTTTTGTACCTGTGACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46057.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis