Browse Element(s) Details


Os.27667.1.S1_at

Description gb:AK111538.1
DB_XREF= gi:37988201
TID=Os.27667.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.27667 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative microtubule-severing protein subunit (OSJNBa0041P03.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013038I11, full insert sequence.
FL= gb:AK111538.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3520010/11Katanin p80 WD40-containing subunit B1 homolog 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35170NANA10+18444113..18447526N-acetyl-gamma-glutamyl-phosphate reductase, chloroplast precursor, putative, expressed
LOC_Os10g35180Os.46480.1.S1_at11/1110+18455285..18460957ABC-2 type transporter family protein, expressed
LOC_Os10g35180OsAffx.27609.1.S1_at1/1110+18455285..18460957ABC-2 type transporter family protein, expressed
LOC_Os10g35190Os.46655.1.A1_at11/1110+18464936..18468703expressed protein
LOC_Os10g35200Os.27667.2.S1_at11/1110+18469134..18476453Katanin p80 WD40-containing subunit B1 homolog 1, putative, expressed
LOC_Os10g35200Os.27667.2.S1_x_at11/1110+18469134..18476453Katanin p80 WD40-containing subunit B1 homolog 1, putative, expressed
LOC_Os10g35200Os.27667.1.S1_at10/1110+18469134..18476453Katanin p80 WD40-containing subunit B1 homolog 1, putative, expressed
LOC_Os10g35210Os.46654.1.S1_at10/1110+18478183..18482380expressed protein
LOC_Os10g35220Os.15361.1.S1_at11/1110+18484012..18490074KH domain containing protein, expressed
LOC_Os10g35220Os.46382.1.S1_at9/1110+18484012..18490074KH domain containing protein, expressed
LOC_Os10g35220Os.46382.2.S2_x_at7/1110+18484012..18490074KH domain containing protein, expressed
LOC_Os10g35220Os.46382.4.S1_x_at3/1110+18484012..18490074KH domain containing protein, expressed
LOC_Os10g35230Os.46057.1.S1_at11/1110+18494070..18495721Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35230Os.46127.1.S1_x_at3/1110+18494070..18495721Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35230Os.46382.2.S1_x_at2/1110+18494070..18495721Rf1 protein, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27667.1.S1_at--766--6291Chr10:18469355..18469379 (25 bp)
GATGATATGATAGCCATACGGCGAT
LOC_Os10g35200
Os.27667.1.S1_at--37--1691Chr10:18469344..18469368 (25 bp)
AGCCATACGGCGATATTTCGCCCAA
LOC_Os10g35200
Os.27667.1.S1_at--55--191Chr10:18469330..18469354 (25 bp)
ATTTCGCCCAAATACTCATCTTTTT
LOC_Os10g35200
Os.27667.1.S1_at--343--4511Chr10:18469325..18469349 (25 bp)
GCCCAAATACTCATCTTTTTTCCTT
LOC_Os10g35200
Os.27667.1.S1_at--870--10371Chr10:18469308..18469332 (25 bp)
TTTTCCTTGGAACAGATAGACAGCT
LOC_Os10g35200
Os.27667.1.S1_at--85--8171Chr10:18469264..18469288 (25 bp)
GGAAACATACAGGTCATCCTTGGCA
LOC_Os10g35200
Os.27667.1.S1_at--465--7131Chr10:18469252..18469276 (25 bp)
GTCATCCTTGGCAAATGTACAGCAA
LOC_Os10g35200
Os.27667.1.S1_at--553--1491Chr10:18469232..18469256 (25 bp)
AGCAAATTCTTGTACCATCCGGTTT
LOC_Os10g35200
Os.27667.1.S1_at--872--6971Chr10:18469221..18469245 (25 bp)
GTACCATCCGGTTTGCAATCAAATA
LOC_Os10g35200
Os.27667.1.S1_at--145--131Chr10:18469150..18469174 (25 bp)
ATTACAGGGCAACAGTACTGCAACA
LOC_Os10g35200
Os.27667.1.S1_at--224--4711Chr10:18469123..18469147 (25 bp)
GCAGGTACCAAATATAGTTTTTCTT
NONE
Target Sequence 
GATGATATGATAGCCATACGGCGATATTTCGCCCAAATACTCATCTTTTTTCCTTGGAACAGATAGACAGCTATAGAGAA
AGATATAGATAGGAAACATACAGGTCATCCTTGGCAAATGTACAGCAAATTCTTGTACCATCCGGTTTGCAATCAAATAC
TAGTCAACAAAAATTCAAAAATCTCTGCAAGTTCAGAGTTATATAATTACAGGGCAACAGTACTGCAACAAAGCAGGTAC
CAAATATAGTTTTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27667.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis