Browse Element(s) Details


Os.46480.1.S1_at

Description gb:AK072452.1
DB_XREF= gi:32982475
TID=Os.46480.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46480 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ABC transporter (OSJNBa0041P03.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023121D13, full insert sequence.
FL= gb:AK072452.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3518011/11ABC-2 type transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35160OsAffx.30677.1.S1_x_at10/1110+18440015..18443070hypothetical protein
LOC_Os10g35160OsAffx.30677.5.S1_x_at9/1110+18440015..18443070hypothetical protein
LOC_Os10g35160OsAffx.30677.1.S1_at8/1110+18440015..18443070hypothetical protein
LOC_Os10g35160Os.53605.1.S1_at2/1110+18440015..18443070hypothetical protein
LOC_Os10g35170NANA10+18444113..18447526N-acetyl-gamma-glutamyl-phosphate reductase, chloroplast precursor, putative, expressed
LOC_Os10g35180Os.46480.1.S1_at11/1110+18455285..18460957ABC-2 type transporter family protein, expressed
LOC_Os10g35180OsAffx.27609.1.S1_at1/1110+18455285..18460957ABC-2 type transporter family protein, expressed
LOC_Os10g35190Os.46655.1.A1_at11/1110+18464936..18468703expressed protein
LOC_Os10g35200Os.27667.2.S1_at11/1110+18469134..18476453Katanin p80 WD40-containing subunit B1 homolog 1, putative, expressed
LOC_Os10g35200Os.27667.2.S1_x_at11/1110+18469134..18476453Katanin p80 WD40-containing subunit B1 homolog 1, putative, expressed
LOC_Os10g35200Os.27667.1.S1_at10/1110+18469134..18476453Katanin p80 WD40-containing subunit B1 homolog 1, putative, expressed
LOC_Os10g35210Os.46654.1.S1_at10/1110+18478183..18482380expressed protein
LOC_Os10g35220Os.15361.1.S1_at11/1110+18484012..18490074KH domain containing protein, expressed
LOC_Os10g35220Os.46382.1.S1_at9/1110+18484012..18490074KH domain containing protein, expressed
LOC_Os10g35220Os.46382.2.S2_x_at7/1110+18484012..18490074KH domain containing protein, expressed
LOC_Os10g35220Os.46382.4.S1_x_at3/1110+18484012..18490074KH domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010025biological_processwax biosynthesis
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46480.1.S1_at--532--8751Chr10:18460375..18460399 (25 bp)
TGTTCGACAACCAGGACGACGAGCT
LOC_Os10g35180
Os.46480.1.S1_at--164--6091Chr10:18460416..18460440 (25 bp)
GAGTACATCCTGGAGAACGTGTTCC
LOC_Os10g35180
Os.46480.1.S1_at--219--2591Chr10:18460431..18460455 (25 bp)
AACGTGTTCCAGATCGACGTGAGCC
LOC_Os10g35180
Os.46480.1.S1_at--415--9371Chr10:18460444..18460468 (25 bp)
TCGACGTGAGCCGATCCAAGTGGCT
LOC_Os10g35180
Os.46480.1.S1_at--477--9331Chr10:18460474..18460498 (25 bp)
TCGCCGTGCTCTTCAGCATGATCTT
LOC_Os10g35180
Os.46480.1.S1_at--245--4291Chr10:18460511..18460535 (25 bp)
CCTCTTCTTCGCCATGATCAAGGTC
LOC_Os10g35180
Os.46480.1.S1_at--173--2891Chr10:18460530..18460554 (25 bp)
AAGGTCAGCGAGGACGTCACCCCGT
LOC_Os10g35180
Os.46480.1.S1_at--456--1411Chr10:18460705..18460729 (25 bp)
AGACACGGCTTCTGAAAACTCTGAA
LOC_Os10g35180
Os.46480.1.S1_at--365--2551Chr10:18460729..18460753 (25 bp)
AACTCTGAACTCCTCAACTGAACAA
LOC_Os10g35180
Os.46480.1.S1_at--933--6451Chr10:18460873..18460897 (25 bp)
GATCAAGCTGTGTTGTTGTATTGTA
LOC_Os10g35180
Os.46480.1.S1_at--648--10171Chr10:18460912..18460936 (25 bp)
TATCAAGGTGTATATCAGCAGCTGA
LOC_Os10g35180
Target Sequence 
TGTTCGACAACCAGGACGACGAGCTCCCCAAGATCCCCGGCGAGTACATCCTGGAGAACGTGTTCCAGATCGACGTGAGC
CGATCCAAGTGGCTGGACCTCGCCGTGCTCTTCAGCATGATCTTCATCTACCGCCTCCTCTTCTTCGCCATGATCAAGGT
CAGCGAGGACGTCACCCCGTGGGTGCGCGGCTACGTCGCGCGGCGCCGGGTGCAGGGCAAGGGCGCCCGCGGCCGCGGGG
CGGACCTCTCCGCCGCGCGCTCGCCGTCGCTCCGCGCCTACGTCGTCGACGCCGCCGACGACCTGCCGCCGGCCTGACCA
CCCGTGAGACAGACACGGCTTCTGAAAACTCTGAAACTCTGAACTCCTCAACTGAACAAGTGGAGACAGAGGAAGAAAAA
GAGAGAGAGGGAGAGGCTAAAACTGAACTAAAAAAAAAAGAACCTGAATATCTGATATGATAATTGTGTGTTATAGTAGT
AGCAATGCTTAATTAATCGATCAAGCTGTGTTGTTGTATTGTATTGATAATTACTAATATCAAGGTGTATATCAGCAGCT
GA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46480.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis