Browse Element(s) Details


Os.27667.2.S1_x_at

Description gb:NM_197152.1
DB_XREF= gi:37535663
TID=Os.27667.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.27667 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative microtubule-severing protein subunit (OSJNBa0041P03.15), mRNA.
PROD=putative microtubule-severing protein subunit
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3520011/11Katanin p80 WD40-containing subunit B1 homolog 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35170NANA10+18444113..18447526N-acetyl-gamma-glutamyl-phosphate reductase, chloroplast precursor, putative, expressed
LOC_Os10g35180Os.46480.1.S1_at11/1110+18455285..18460957ABC-2 type transporter family protein, expressed
LOC_Os10g35180OsAffx.27609.1.S1_at1/1110+18455285..18460957ABC-2 type transporter family protein, expressed
LOC_Os10g35190Os.46655.1.A1_at11/1110+18464936..18468703expressed protein
LOC_Os10g35200Os.27667.2.S1_at11/1110+18469134..18476453Katanin p80 WD40-containing subunit B1 homolog 1, putative, expressed
LOC_Os10g35200Os.27667.2.S1_x_at11/1110+18469134..18476453Katanin p80 WD40-containing subunit B1 homolog 1, putative, expressed
LOC_Os10g35200Os.27667.1.S1_at10/1110+18469134..18476453Katanin p80 WD40-containing subunit B1 homolog 1, putative, expressed
LOC_Os10g35210Os.46654.1.S1_at10/1110+18478183..18482380expressed protein
LOC_Os10g35220Os.15361.1.S1_at11/1110+18484012..18490074KH domain containing protein, expressed
LOC_Os10g35220Os.46382.1.S1_at9/1110+18484012..18490074KH domain containing protein, expressed
LOC_Os10g35220Os.46382.2.S2_x_at7/1110+18484012..18490074KH domain containing protein, expressed
LOC_Os10g35220Os.46382.4.S1_x_at3/1110+18484012..18490074KH domain containing protein, expressed
LOC_Os10g35230Os.46057.1.S1_at11/1110+18494070..18495721Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35230Os.46127.1.S1_x_at3/1110+18494070..18495721Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35230Os.46382.2.S1_x_at2/1110+18494070..18495721Rf1 protein, mitochondrial precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27667.2.S1_x_at--603--891Chr10:18470378..18470402 (25 bp)
AGGCGCTCTTCGGTTGCTAGAGAAC
LOC_Os10g35200
Os.27667.2.S1_x_at--845--9611Chr10:18470289..18470313 (25 bp)
TCATGCAGTGAAGTCTCGGCTAACA
LOC_Os10g35200
Os.27667.2.S1_x_at--585--1871Chr10:18470249..18470273 (25 bp)
ACGAGTATGGTCATCTATAGCATCT
LOC_Os10g35200
Os.27667.2.S1_x_at--473--4971Chr10:18470230..18470254 (25 bp)
GCATCTGCTATTTTGAGATACCTCG
LOC_Os10g35200
Os.27667.2.S1_x_at--344--6032Chr08:19969205..19969336 (24 bp)
GAGATACCTCGAGTAACGGTTACCG
NONE
Os.27667.2.S1_x_at--194--11Chr10:18470021..18470044 (24 bp)
CGGTTACCGCCGATATAATTAGTGT
LOC_Os10g35200
Os.27667.2.S1_x_at--1128--9571Chr10:18469942..18469966 (25 bp)
TCTTGCCTCCAGTGTTCTTGAAAAA
LOC_Os10g35200
Os.27667.2.S1_x_at--502--2351Chr10:18469850..18469943 (25 bp)
AAAGCAGCTATGACAGGCACCTGAA
LOC_Os10g35200
Os.27667.2.S1_x_at--631--251Chr10:18469776..18469800 (25 bp)
ATATCTTCAGCTGTGTCATCTACTC
LOC_Os10g35200
Os.27667.2.S1_x_at--817--5491Chr10:18469617..18469749 (25 bp)
GAACAGAGGCTCAATCGGTGCAATT
LOC_Os10g35200
Os.27667.2.S1_x_at--192--9831Chr10:18469574..18469598 (25 bp)
TAAAAGTTCACAGCGTTCTCTTTGC
LOC_Os10g35200
Target Sequence 
AGGCGCTCTTCGGTTGCTAGAGAACAGAGTGCATCAGCTGGTGATGAAGATGATATTGCTGATCTGATGGAAAACCATCA
AGAATTCATTCATGCAGTGAAGTCTCGGCTAACAAAACTAGAGGTTATAACGAGTATGGTCATCTATAGCATCTGCTATT
TTGAGATACCTCGAGTAACGGTTACCGCCGATATAATTAGTGTTCTGATGGAGAATGATAATTCTATCACACTAGATATT
TGTACTTGTGTCTTACCTCTTGCCTCCAGTGTTCTTGAAAAAAGCAGCTATGACAGGCACCTGAAAGTTGCCTTGGAGAT
GATCCTTAAGCTTGTGAAAAGCTTTGGTTCTACAATATCTTCAGCTGTGTCATCTACTCCACCAGTTGGTGTAGACATTG
AGGCAGAACAGAGGCTCAATCGGTGCAATTTGTGCTTTCTAGAGCTGATAAAAGTTCACAGCGTTCTCTTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27667.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis