Browse Element(s) Details


Os.15361.1.S1_at

Description gb:AK066573.1
DB_XREF= gi:32976591
TID=Os.15361.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.15361 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative RNA-binding protein (OSJNBa0041P03.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013072P14, full insert sequence.
FL= gb:AK066573.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3522011/11KH domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35180Os.46480.1.S1_at11/1110+18455285..18460957ABC-2 type transporter family protein, expressed
LOC_Os10g35180OsAffx.27609.1.S1_at1/1110+18455285..18460957ABC-2 type transporter family protein, expressed
LOC_Os10g35190Os.46655.1.A1_at11/1110+18464936..18468703expressed protein
LOC_Os10g35200Os.27667.2.S1_at11/1110+18469134..18476453Katanin p80 WD40-containing subunit B1 homolog 1, putative, expressed
LOC_Os10g35200Os.27667.2.S1_x_at11/1110+18469134..18476453Katanin p80 WD40-containing subunit B1 homolog 1, putative, expressed
LOC_Os10g35200Os.27667.1.S1_at10/1110+18469134..18476453Katanin p80 WD40-containing subunit B1 homolog 1, putative, expressed
LOC_Os10g35210Os.46654.1.S1_at10/1110+18478183..18482380expressed protein
LOC_Os10g35220Os.15361.1.S1_at11/1110+18484012..18490074KH domain containing protein, expressed
LOC_Os10g35220Os.46382.1.S1_at9/1110+18484012..18490074KH domain containing protein, expressed
LOC_Os10g35220Os.46382.2.S2_x_at7/1110+18484012..18490074KH domain containing protein, expressed
LOC_Os10g35220Os.46382.4.S1_x_at3/1110+18484012..18490074KH domain containing protein, expressed
LOC_Os10g35230Os.46057.1.S1_at11/1110+18494070..18495721Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35230Os.46127.1.S1_x_at3/1110+18494070..18495721Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35230Os.46382.2.S1_x_at2/1110+18494070..18495721Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35240Os.46899.1.S1_at11/1110+18503780..18506439Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35240Os.46127.1.S1_x_at8/1110+18503780..18506439Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35240Os.46382.2.S1_x_at2/1110+18503780..18506439Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35250Os.20281.1.S1_at11/1110+18508136..18513597hydroxyproline-rich glycoprotein family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15361.1.S1_at--812--10131Chr10:18489382..18489406 (25 bp)
TATCTGGAATCTGTCATTGGAGCTG
LOC_Os10g35220
Os.15361.1.S1_at--808--6371Chr10:18489426..18489548 (25 bp)
GATCCGTCAGATCTCTGGCGCGAGA
LOC_Os10g35220
Os.15361.1.S1_at--796--1152Chr10:18629095..18629119 (25 bp)
AGTAAGCTGGAGGACATTCGCAACA
NONE
Os.15361.1.S1_at--1105--7091Chr10:18489742..18489766 (25 bp)
GTCACTGCACAGCTGAGTTTGTTCT
LOC_Os10g35220
Os.15361.1.S1_at--388--9131Chr10:18489787..18489811 (25 bp)
TGCGGATCGGTTGCCATAGTTGCTA
LOC_Os10g35220
Os.15361.1.S1_at--334--3971Chr10:18489815..18489839 (25 bp)
CGGTACATAGATGCCACCTAACTGT
LOC_Os10g35220
Os.15361.1.S1_at--554--5891Chr10:18489843..18489867 (25 bp)
GAGCGGCATAACTTTCATATTGTGT
LOC_Os10g35220
Os.15361.1.S1_at--20--2431Chr10:18489897..18489921 (25 bp)
AAAAGCTGTACTGCCCAATGTTGTC
LOC_Os10g35220
Os.15361.1.S1_at--500--7151Chr10:18489919..18489943 (25 bp)
GTCTCTCCTTTTGTTCATGGATTCA
LOC_Os10g35220
Os.15361.1.S1_at--1056--3411Chr10:18489942..18489966 (25 bp)
CAGACTTGTGACTTGATTACTTGTA
LOC_Os10g35220
Os.15361.1.S1_at--498--2071Chr10:18489960..18489984 (25 bp)
ACTTGTAGTCCTTCATGGATCAGAC
LOC_Os10g35220
Target Sequence 
TATCTGGAATCTGTCATTGGAGCTGGTGGTGTCAATCTAGCTGAGATCCGTCAGATCTCTGGCGCGAGAGTGAAGTTGCA
CGAAGCCCATCCCGGTTCTTCCGAGTCCATTGTGGAGATCCAGGGCATTCCGGATCAAGTGAAAGCCGCACAGAGCCTTC
TGCAAGGNTTCATCGGCGCAAGCAGCAACAGCAGGCAGGCGCCCCAGTCCTCTCGCATGGCCCATTATTTTTAGTAAGCT
GGAGGACATTCGCAACAGGGGGGTCACTGCACAGCTGAGTTTGTTCTTCAGTTCAACTGCAGAAAATTGCGGATCGGTTG
CCATAGTTGCTAGAACGGTACATAGATGCCACCTAACTGTAGTGAGCGGCATAACTTTCATATTGTGTTTATCGACTATC
TAGTNGATTTTAGCGGCAAAAGCTGTACTGCCCAATGTTGTCTCTCCTTTTGTTCATGGATTCAGACTTGTGACTTGATT
ACTTGTAGTCCTTCATGGATCAGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15361.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis