Browse Element(s) Details


Os.46653.1.S1_at

Description gb:NM_197160.1
DB_XREF= gi:37535679
TID=Os.46653.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46653 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0041P03.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0041P03.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3528011/11Uncharacterised protein family containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35240Os.46899.1.S1_at11/1110+18503780..18506439Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35240Os.46127.1.S1_x_at8/1110+18503780..18506439Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35240Os.46382.2.S1_x_at2/1110+18503780..18506439Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35250Os.20281.1.S1_at11/1110+18508136..18513597hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os10g35260Os.46127.1.S1_x_at11/1110+18517223..18519477Rf1 protein, mitochondrial precursor, putative
LOC_Os10g35260Os.46127.1.S1_at10/1110+18517223..18519477Rf1 protein, mitochondrial precursor, putative
LOC_Os10g35260Os.46382.2.S1_x_at2/1110+18517223..18519477Rf1 protein, mitochondrial precursor, putative
LOC_Os10g35270OsAffx.71.1.S1_at5/1110+18520584..18520868hypothetical protein
LOC_Os10g35270OsAffx.71.1.S1_x_at4/1110+18520584..18520868hypothetical protein
LOC_Os10g35280Os.46653.1.S1_at11/1110+18522637..18527636Uncharacterised protein family containing protein, expressed
LOC_Os10g35290Os.46652.1.S1_at11/1110+18528183..18538046DNA-directed RNA polymerase, beta subunit family protein, expressed
LOC_Os10g35294NANA10+18540336..18543271fiber protein Fb34, putative, expressed
LOC_Os10g35300Os.55986.1.S1_x_at11/1110+18543925..18545407Dof domain, zinc finger family protein, expressed
LOC_Os10g35310OsAffx.18524.1.S1_at6/1110+18552246..18553009expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46653.1.S1_at--353--6571Chr10:18523750..18523774 (25 bp)
GATTCTCTCCTAATGATCCAGCCGT
LOC_Os10g35280
Os.46653.1.S1_at--151--5391Chr10:18523615..18523639 (25 bp)
GAAGCAAAGTCAAGTCCTCTATCAA
LOC_Os10g35280
Os.46653.1.S1_at--68--3111Chr10:18523590..18523614 (25 bp)
AATATGTTGCTACTCTACATCAGAG
LOC_Os10g35280
Os.46653.1.S1_at--589--5651Chr10:18523558..18523582 (25 bp)
GACAGGATGGACTCTCTGGACGACA
LOC_Os10g35280
Os.46653.1.S1_at--694--1331Chr10:18523296..18523320 (25 bp)
AGAGTCCTCAACCTTTTCACGGAGG
LOC_Os10g35280
Os.46653.1.S1_at--1047--6211Chr10:18523235..18523259 (25 bp)
GATGGCGAAGACACCATTGCATTCA
LOC_Os10g35280
Os.46653.1.S1_at--680--5391Chr10:18523070..18523094 (25 bp)
GAAGCGAGCCCATAATCACGACGAT
LOC_Os10g35280
Os.46653.1.S1_at--525--7991Chr10:18522956..18522980 (25 bp)
GGATGATGGCTCTATGCCTGTTGAA
LOC_Os10g35280
Os.46653.1.S1_at--881--1631Chr10:18522925..18522949 (25 bp)
AGCGATGACGATTTCGTCGACCCAG
LOC_Os10g35280
Os.46653.1.S1_at--712--7211Chr10:18522910..18522934 (25 bp)
GTCGACCCAGACAGCCAGTGGAAGA
LOC_Os10g35280
Os.46653.1.S1_at--877--8151Chr10:18522858..18522882 (25 bp)
GGAACAAGCGGCAACCCTCAAAGAA
LOC_Os10g35280
Target Sequence 
GATTCTCTCCTAATGATCCAGCCGTGGATTCATTTCTACAGGTTGAGAAGGAAGCAAAGTCAAGTCCTCTATCAAAATAT
GTTGCTACTCTACATCAGAGAAGTCAGGACAGGATGGACTCTCTGGACGACACAAGCGTTATTGTGGGGGCAGAGTCCTC
AACCTTTTCACGGAGGTTGTCAGAAGCACAGAAGCGACAGGATGAACAAGATGATGGCGAAGACACCATTGCATTCAGTA
AGAACTTGTTGACTGAAAAGAAGAAAACCAAAACTCCAAAGGAGAAGAGCAAGAAGCGAGCCCATAATCACGACGATGTC
GCTACGGAGGAGGATATTGTTGAGGATTTGATCTTGAGTTCAGACGAGGAAGACGAAGATGAGGACAAGAATATGGAATC
AGATGAGGATGATGGCTCTATGCCTGTTGAAGATGACAGCGATGACGATTTCGTCGACCCAGACAGCCAGTGGAAGAAAC
AGAAGAAAGAGAAATCAAAGAAACGGAACAAGCGGCAACCCTCAAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46653.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis