Browse Element(s) Details


OsAffx.4499.1.S1_at

Description tigr:9633.m03012
TID=OsAffx.4499.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3283011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32780OsAffx.27125.1.S1_at11/115+19120545..19121846hypothetical protein
LOC_Os05g32790OsAffx.14928.1.S1_at11/115+19124913..19125310hypothetical protein
LOC_Os05g32800OsAffx.4498.1.S1_at11/115+19130537..19131184hypothetical protein
LOC_Os05g32810OsAffx.14929.1.S1_x_at11/115+19134093..19135953expressed protein
LOC_Os05g32810Os.21778.1.S1_at11/115+19134093..19135953expressed protein
LOC_Os05g32820Os.18513.1.S1_at11/115+19138973..19141184Peptide-N4-asparagine amidase A, putative, expressed
LOC_Os05g32830OsAffx.4499.1.S1_at11/115+19143880..19145999hypothetical protein
LOC_Os05g32830OsAffx.71.1.S1_x_at2/115+19143880..19145999hypothetical protein
LOC_Os05g32840OsAffx.4500.1.S1_at11/115+19147840..19148448hypothetical protein
LOC_Os05g32850Os.15515.1.S1_at7/115+19149703..19157101CBS domain-containing protein, putative, expressed
LOC_Os05g32860NANA5+19157799..19158107hypothetical protein
LOC_Os05g32870OsAffx.4501.1.S1_at11/115+19170471..19171728hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4499.1.S1_at--38--3911Chr05:19145260..19145284 (25 bp)
CTGGTGCTCTCTAGGGTGGCCGTCA
LOC_Os05g32830
OsAffx.4499.1.S1_at--183--5771Chr05:19145331..19145355 (25 bp)
GACGACTATGACCTCATCGGTAGGA
LOC_Os05g32830
OsAffx.4499.1.S1_at--820--8011Chr05:19145353..19145377 (25 bp)
GGAGGACCACATGTCCGTAGGACCA
LOC_Os05g32830
OsAffx.4499.1.S1_at--723--3171Chr05:19145589..19145613 (25 bp)
AATTGGGATTCTCTAAGGCCTCTAC
LOC_Os05g32830
OsAffx.4499.1.S1_at--175--2971Chr05:19145631..19145655 (25 bp)
AATGGACATACCGAACACCTACCTT
LOC_Os05g32830
OsAffx.4499.1.S1_at--941--2511Chr05:19145683..19145707 (25 bp)
AACTTCGACAGGTTGCTAGGCAAAG
LOC_Os05g32830
OsAffx.4499.1.S1_at--403--8191Chr05:19145718..19145742 (25 bp)
GGAAGATCCACGTGGTCACACCAAA
LOC_Os05g32830
OsAffx.4499.1.S1_at--616--2311Chr05:19145740..19145764 (25 bp)
AAAGTCACTCCGTAGGTCGATTTTG
LOC_Os05g32830
OsAffx.4499.1.S1_at--476--4111Chr05:19145826..19145850 (25 bp)
CGAACGGCGGTGATGCTGTCAACGA
LOC_Os05g32830
OsAffx.4499.1.S1_at--729--5911Chr05:19145849..19145873 (25 bp)
GAGCTTGAATAGTTGCCTCGTCTCC
LOC_Os05g32830
OsAffx.4499.1.S1_at--502--5631Chr05:19145936..19145960 (25 bp)
GACACTTGACGAGGGAGAGCACATC
LOC_Os05g32830
Target Sequence 
CTGGTGCTCTCTAGGGTGGCCGTCAGCAGGGCCAAGGGATGGCGCTATGTGGATCTAGAGGTGGAGGCCAAGACGACTAT
GACCTCATCGGTAGGAGGACCACATGTCCGTAGGACCAGTGGTGAAGAGGAAGGAGGGACAAGTGTGGGAAGAGTGAAAT
CTCGAGACAACGGTAAACGTAAAAATTGGGATTCTCTAAGGCCTCTACTAAAGAAGTTTGCTAGCAATGGACATACCGAA
CACCTACCTTTCAAGGTGGTCTCGGGCATCATTAGGCAACTTCGACAGGTTGCTAGGCAAAGCGGATGCTGTGGAAGATC
CACGTGGTCACACCAAAGTCACTCCGTAGGTCGATTTTGGCGGGCGACGGTCTCCAGGGTGGCGGAAAAGGAGCAAGAAG
GTGGCGACATCATCTCCATCCGAACGGCGGTGATGCTGTCAACGAGCTTGAATAGTTGCCTCGTCTCCTCTTTCTCCTCT
CTTCCGAGCAGCACGGGCGGCGGTGGTGGAGTTCAAGGCTTTGGTGGCATGACACTTGACGAGGGAGAGCACATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4499.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis