Browse Element(s) Details


OsAffx.14929.1.S1_x_at

Description tigr:9633.m03010
TID=OsAffx.14929.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AF367344 AT5g05480MOP10_2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3281011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32770OsAffx.27124.1.S1_at7/115+19111120..19113929hypothetical protein
LOC_Os05g32770OsAffx.24473.1.S1_at6/115+19111120..19113929hypothetical protein
LOC_Os05g32780OsAffx.27125.1.S1_at11/115+19120545..19121846hypothetical protein
LOC_Os05g32790OsAffx.14928.1.S1_at11/115+19124913..19125310hypothetical protein
LOC_Os05g32800OsAffx.4498.1.S1_at11/115+19130537..19131184hypothetical protein
LOC_Os05g32810OsAffx.14929.1.S1_x_at11/115+19134093..19135953expressed protein
LOC_Os05g32810Os.21778.1.S1_at11/115+19134093..19135953expressed protein
LOC_Os05g32820Os.18513.1.S1_at11/115+19138973..19141184Peptide-N4-asparagine amidase A, putative, expressed
LOC_Os05g32830OsAffx.4499.1.S1_at11/115+19143880..19145999hypothetical protein
LOC_Os05g32830OsAffx.71.1.S1_x_at2/115+19143880..19145999hypothetical protein
LOC_Os05g32840OsAffx.4500.1.S1_at11/115+19147840..19148448hypothetical protein
LOC_Os05g32850Os.15515.1.S1_at7/115+19149703..19157101CBS domain-containing protein, putative, expressed
LOC_Os05g32860NANA5+19157799..19158107hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14929.1.S1_x_at--103--2911Chr05:19134801..19134825 (25 bp)
AAGGTTATCTAGCTCAGTCATGTCT
LOC_Os05g32810
OsAffx.14929.1.S1_x_at--89--1171Chr05:19134786..19134810 (25 bp)
AGTCATGTCTGCACAATCCCAATAT
LOC_Os05g32810
OsAffx.14929.1.S1_x_at--120--8991Chr05:19134753..19134777 (25 bp)
TGAACCGCTACTTCCTGTTGATGAG
LOC_Os05g32810
OsAffx.14929.1.S1_x_at--239--6151Chr05:19134731..19134755 (25 bp)
GAGGTGTTGCAACTAGCTTCATCAA
LOC_Os05g32810
OsAffx.14929.1.S1_x_at--689--4891Chr05:19134706..19134730 (25 bp)
GCTTATCCAGTTCGCTCAAATCAGG
LOC_Os05g32810
OsAffx.14929.1.S1_x_at--915--1251Chr05:19134681..19134705 (25 bp)
AGATAACATCGCTCAACTTTTGGGA
LOC_Os05g32810
OsAffx.14929.1.S1_x_at--410--5651Chr05:19134578..19134602 (25 bp)
GACAGCATTGCGCAGTTCCAACAAA
LOC_Os05g32810
OsAffx.14929.1.S1_x_at--691--9071Chr05:19134474..19134498 (25 bp)
TGCTTCAGACACCATTACACAGTTC
LOC_Os05g32810
OsAffx.14929.1.S1_x_at--186--9771Chr05:19134438..19134462 (25 bp)
TAATGCTGATGAGTCGCTGCCGCTT
LOC_Os05g32810
OsAffx.14929.1.S1_x_at--606--6091Chr05:19134369..19134393 (25 bp)
GAGTACTTGGTCATCTGCTGCAGAA
LOC_Os05g32810
OsAffx.14929.1.S1_x_at--797--6331Chr05:19134308..19134332 (25 bp)
GATGCTTCCTTCCATGACAGTATTG
LOC_Os05g32810
Target Sequence 
AAGGTTATCTAGCTCAGTCATGTCTGCACAATCCCAATATAGAGTTGATGAACCGCTACTTCCTGTTGATGAGGTGTTGC
AACTAGCTTCATCAAGCTTATCCAGTTCGCTCAAATCAGGAGATAACATCGCTCAACTTTTGGGAGTACTTGATGTGCAT
TTACCTGTTGATGAGTTACTGCAACTACCTTCATTGATCTTATCTAGCTCAGTGAAATCATCAGACAGCATTGCGCAGTT
CCAACAAAAGGCTGATGCTGATGAGATGCTGCAATCATCTAGCTTAGCCAGCTCAGAGAAACCAGCAACTTTCAAGAATT
GGTCATCTGCTTCAGACACCATTACACAGTTCCAGCAAAGGGCTAATGCTGATGAGTCGCTGCCGCTTCCTTCATCTAGC
TTGGCCAGCTCAGAGAAACCAGCAACATTCAAGAGTACTTGGTCATCTGCTGCAGAATCAAATTCAGTTTTCAGTGGTGA
TGAAGAGATTGATGATGCTTCCTTCCATGACAGTATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14929.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis