Browse Element(s) Details


OsAffx.4498.1.S1_at

Description tigr:9633.m03009
TID=OsAffx.4498.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3280011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32770OsAffx.27124.1.S1_at7/115+19111120..19113929hypothetical protein
LOC_Os05g32770OsAffx.24473.1.S1_at6/115+19111120..19113929hypothetical protein
LOC_Os05g32780OsAffx.27125.1.S1_at11/115+19120545..19121846hypothetical protein
LOC_Os05g32790OsAffx.14928.1.S1_at11/115+19124913..19125310hypothetical protein
LOC_Os05g32800OsAffx.4498.1.S1_at11/115+19130537..19131184hypothetical protein
LOC_Os05g32810OsAffx.14929.1.S1_x_at11/115+19134093..19135953expressed protein
LOC_Os05g32810Os.21778.1.S1_at11/115+19134093..19135953expressed protein
LOC_Os05g32820Os.18513.1.S1_at11/115+19138973..19141184Peptide-N4-asparagine amidase A, putative, expressed
LOC_Os05g32830OsAffx.4499.1.S1_at11/115+19143880..19145999hypothetical protein
LOC_Os05g32830OsAffx.71.1.S1_x_at2/115+19143880..19145999hypothetical protein
LOC_Os05g32840OsAffx.4500.1.S1_at11/115+19147840..19148448hypothetical protein
LOC_Os05g32850Os.15515.1.S1_at7/115+19149703..19157101CBS domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4498.1.S1_at--53--4591Chr05:19131121..19131145 (25 bp)
GCGCAAAGCGGAATGTCGCCCAGCC
LOC_Os05g32800
OsAffx.4498.1.S1_at--764--2351Chr05:19131117..19131141 (25 bp)
AAAGCGGAATGTCGCCCAGCCCACA
LOC_Os05g32800
OsAffx.4498.1.S1_at--730--7231Chr05:19131107..19131131 (25 bp)
GTCGCCCAGCCCACAAGACAAGAGT
LOC_Os05g32800
OsAffx.4498.1.S1_at--530--4551Chr05:19131099..19131123 (25 bp)
GCCCACAAGACAAGAGTGCCGATGT
LOC_Os05g32800
OsAffx.4498.1.S1_at--895--2211Chr05:19131090..19131114 (25 bp)
ACAAGAGTGCCGATGTGGAGTTCAT
LOC_Os05g32800
OsAffx.4498.1.S1_at--550--6071Chr05:19131073..19131097 (25 bp)
GAGTTCATGCATGGTGTGGTCGACA
LOC_Os05g32800
OsAffx.4498.1.S1_at--91--9631Chr05:19131069..19131093 (25 bp)
TCATGCATGGTGTGGTCGACATGGA
LOC_Os05g32800
OsAffx.4498.1.S1_at--30--7511Chr05:19131058..19131082 (25 bp)
GTGGTCGACATGGATCAGAACTGGA
LOC_Os05g32800
OsAffx.4498.1.S1_at--54--9371Chr05:19131054..19131078 (25 bp)
TCGACATGGATCAGAACTGGAGCCT
LOC_Os05g32800
OsAffx.4498.1.S1_at--221--391Chr05:19131045..19131069 (25 bp)
ATCAGAACTGGAGCCTGGAGCTGCC
LOC_Os05g32800
OsAffx.4498.1.S1_at--457--2571Chr05:19131040..19131064 (25 bp)
AACTGGAGCCTGGAGCTGCCTCCTG
LOC_Os05g32800
Target Sequence 
GCGCAAAGCGGAATGTCGCCCAGCCCACAAGACAAGAGTGCCGATGTGGAGTTCATGCATGGTGTGGTCGACATGGATCA
GAACTGGAGCCTGGAGCTGCCTCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4498.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis