Browse Element(s) Details


Os.21778.1.S1_at

Description gb:AK058958.1
DB_XREF= gi:32968976
TID=Os.21778.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21778 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-020-B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-020-B07, full insert sequence.
FL= gb:AK058958.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3281011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32770OsAffx.27124.1.S1_at7/115+19111120..19113929hypothetical protein
LOC_Os05g32770OsAffx.24473.1.S1_at6/115+19111120..19113929hypothetical protein
LOC_Os05g32780OsAffx.27125.1.S1_at11/115+19120545..19121846hypothetical protein
LOC_Os05g32790OsAffx.14928.1.S1_at11/115+19124913..19125310hypothetical protein
LOC_Os05g32800OsAffx.4498.1.S1_at11/115+19130537..19131184hypothetical protein
LOC_Os05g32810OsAffx.14929.1.S1_x_at11/115+19134093..19135953expressed protein
LOC_Os05g32810Os.21778.1.S1_at11/115+19134093..19135953expressed protein
LOC_Os05g32820Os.18513.1.S1_at11/115+19138973..19141184Peptide-N4-asparagine amidase A, putative, expressed
LOC_Os05g32830OsAffx.4499.1.S1_at11/115+19143880..19145999hypothetical protein
LOC_Os05g32830OsAffx.71.1.S1_x_at2/115+19143880..19145999hypothetical protein
LOC_Os05g32840OsAffx.4500.1.S1_at11/115+19147840..19148448hypothetical protein
LOC_Os05g32850Os.15515.1.S1_at7/115+19149703..19157101CBS domain-containing protein, putative, expressed
LOC_Os05g32860NANA5+19157799..19158107hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21778.1.S1_at--296--731Chr05:19134239..19134263 (25 bp)
ATGTGTGCTAACTAGCCGTATGAAT
LOC_Os05g32810
Os.21778.1.S1_at--484--2531Chr05:19134230..19134254 (25 bp)
AACTAGCCGTATGAATACTACACAT
LOC_Os05g32810
Os.21778.1.S1_at--838--5231Chr05:19134218..19134242 (25 bp)
GAATACTACACATATGGTGCTGAAT
LOC_Os05g32810
Os.21778.1.S1_at--634--271Chr05:19134207..19134231 (25 bp)
ATATGGTGCTGAATTCGTGAATGGC
LOC_Os05g32810
Os.21778.1.S1_at--507--8971Chr05:19134198..19134222 (25 bp)
TGAATTCGTGAATGGCGTGTTTTAT
LOC_Os05g32810
Os.21778.1.S1_at--1159--9411Chr05:19134193..19134217 (25 bp)
TCGTGAATGGCGTGTTTTATAAGAA
LOC_Os05g32810
Os.21778.1.S1_at--516--7032Chr05:13312312..13312332 (21 bp)
GTAAAACCAAATCTAGGATCTTGCT
NONE
Os.21778.1.S1_at--452--451Chr05:19134158..19134182 (25 bp)
ATCTAGGATCTTGCTATGAACTTGG
LOC_Os05g32810
Os.21778.1.S1_at--453--5491Chr05:19134141..19134165 (25 bp)
GAACTTGGTCCTTCTTATTATTTGA
LOC_Os05g32810
Os.21778.1.S1_at--454--7791Chr05:19134135..19134159 (25 bp)
GGTCCTTCTTATTATTTGAATTCGC
LOC_Os05g32810
Os.21778.1.S1_at--562--151Chr05:19134125..19134149 (25 bp)
ATTATTTGAATTCGCAAATCTGCTT
LOC_Os05g32810
Target Sequence 
ATGTGTGCTAACTAGCCGTATGAATACTACACATATGGTGCTGAATTCGTGAATGGCGTGTTTTATAAGAAGTAAAACCA
AATCTAGGATCTTGCTATGAACTTGGTCCTTCTTATTATTTGAATTCGCAAATCTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21778.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis