Browse Element(s) Details


OsAffx.4501.1.S1_at

Description tigr:9633.m03017
TID=OsAffx.4501.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3287011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32830OsAffx.4499.1.S1_at11/115+19143880..19145999hypothetical protein
LOC_Os05g32830OsAffx.71.1.S1_x_at2/115+19143880..19145999hypothetical protein
LOC_Os05g32840OsAffx.4500.1.S1_at11/115+19147840..19148448hypothetical protein
LOC_Os05g32850Os.15515.1.S1_at7/115+19149703..19157101CBS domain-containing protein, putative, expressed
LOC_Os05g32860NANA5+19157799..19158107hypothetical protein
LOC_Os05g32870OsAffx.4501.1.S1_at11/115+19170471..19171728hypothetical protein
LOC_Os05g32880OsAffx.14931.1.S1_at11/115+19172595..19176745Response regulator receiver domain containing protein
LOC_Os05g32890OsAffx.27127.1.S1_at11/115+19178437..19182453myb-like DNA-binding domain, SHAQKYF class family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4501.1.S1_at--622--3251Chr05:19170510..19170534 (25 bp)
CAACCCAATCCTGGCACTATTATGT
LOC_Os05g32870
OsAffx.4501.1.S1_at--828--10211Chr05:19170527..19170551 (25 bp)
TATTATGTCCCTCAGCTTGTTCTCA
LOC_Os05g32870
OsAffx.4501.1.S1_at--994--3611Chr05:19170578..19170602 (25 bp)
CTTGCTCCGCGGTTTGTTAGAAACA
LOC_Os05g32870
OsAffx.4501.1.S1_at--648--4411Chr05:19170620..19170644 (25 bp)
GCCAGTAGGCACACGATCAAACCAT
LOC_Os05g32870
OsAffx.4501.1.S1_at--469--371Chr05:19170635..19170659 (25 bp)
ATCAAACCATCGTAGCCCTTATGAG
LOC_Os05g32870
OsAffx.4501.1.S1_at--162--8071Chr05:19170917..19170941 (25 bp)
GGAGCACAGCTACCACTTTTGCTAT
LOC_Os05g32870
OsAffx.4501.1.S1_at--131--10271Chr05:19170934..19170958 (25 bp)
TTTGCTATCATCCTCCATTGTTAAC
LOC_Os05g32870
OsAffx.4501.1.S1_at--163--8131Chr05:19170965..19171290 (25 bp)
GGACTAACCTGTTGTACGACATCGT
LOC_Os05g32870
OsAffx.4501.1.S1_at--549--7571Chr05:19171553..19171577 (25 bp)
GGGCTAGCCTACTCGTGGATTTCAG
LOC_Os05g32870
OsAffx.4501.1.S1_at--898--8571Chr05:19171623..19171647 (25 bp)
TGGTAGCCAAGTTCATGACGCCGAC
LOC_Os05g32870
OsAffx.4501.1.S1_at--365--1471Chr05:19171674..19171698 (25 bp)
AGAAGGTACCACCATGCTGCTATCT
LOC_Os05g32870
Target Sequence 
CAACCCAATCCTGGCACTATTATGTCCCTCAGCTTGTTCTCATCCTCTCCGCATTTGAACCCAAGCACCTTGCTCCGCGG
TTTGTTAGAAACAGAGGCACAATTGTTTGTGCCAGTAGGCACACGATCAAACCATCGTAGCCCTTATGAGAACCCCCCTC
TCCCCTCGAACCATAATCCAATTGGCGGAGCACAGCTACCACTTTTGCTATCATCCTCCATTGTTAACCACAATGGACTA
ACCTGTTGTACGACATCGTCGAAGTGGATATTTGGGAGAAAACACACTCAAAATATAGAGCCTCAAGAATGGGCTAGCCT
ACTCGTGGATTTCAGGCCAATAGAGGCAGGATGTTGCTGCCATGGGCTCGCTGGACAAGGTGGTAGCCAAGTTCATGACG
CCGACGATGGATTCCATGCTGGAGAAGGTGCAGAAGGTACCACCATGCTGCTATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4501.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis