Browse Element(s) Details


OsAffx.14931.1.S1_at

Description tigr:9633.m03018
TID=OsAffx.14931.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Response regulator receiver domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3288011/11Response regulator receiver domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32840OsAffx.4500.1.S1_at11/115+19147840..19148448hypothetical protein
LOC_Os05g32850Os.15515.1.S1_at7/115+19149703..19157101CBS domain-containing protein, putative, expressed
LOC_Os05g32860NANA5+19157799..19158107hypothetical protein
LOC_Os05g32870OsAffx.4501.1.S1_at11/115+19170471..19171728hypothetical protein
LOC_Os05g32880OsAffx.14931.1.S1_at11/115+19172595..19176745Response regulator receiver domain containing protein
LOC_Os05g32890OsAffx.27127.1.S1_at11/115+19178437..19182453myb-like DNA-binding domain, SHAQKYF class family protein
LOC_Os05g32900OsAffx.14584.2.S1_x_at11/115+19199780..19200384Hexose carrier protein HEX6, putative
LOC_Os05g32900OsAffx.14584.2.S1_at11/115+19199780..19200384Hexose carrier protein HEX6, putative
LOC_Os05g32910NANA5+19201172..19201408hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009736biological_processcytokinin mediated signaling
GO:0000156molecular_functiontwo-component response regulator activity
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14931.1.S1_at--721--9891Chr05:19173078..19173102 (25 bp)
TACTTCAGGTACTCGTGGTGTGCTT
LOC_Os05g32880
OsAffx.14931.1.S1_at--424--5971Chr05:19173044..19173068 (25 bp)
GAGAACCTCCTGCATGTTGTTAGTG
LOC_Os05g32880
OsAffx.14931.1.S1_at--228--10071Chr05:19173024..19173048 (25 bp)
TAGTGCATCGTTGCCATCAAACATG
LOC_Os05g32880
OsAffx.14931.1.S1_at--285--2851Chr05:19172982..19173006 (25 bp)
AAGTCAAAGCTTCTGCACCAATGAA
LOC_Os05g32880
OsAffx.14931.1.S1_at--90--5211Chr05:19172960..19172984 (25 bp)
GAATTGGCAGCTAACTACAGTATTA
LOC_Os05g32880
OsAffx.14931.1.S1_at--505--4431Chr05:19172911..19172935 (25 bp)
GCCATCCAACTAGCTCTAGTGCTAT
LOC_Os05g32880
OsAffx.14931.1.S1_at--328--5991Chr05:19172737..19172761 (25 bp)
GAGACTTACTCCAGCAGGGTGTAGT
LOC_Os05g32880
OsAffx.14931.1.S1_at--554--9071Chr05:19172682..19172706 (25 bp)
TGCTTTTGATTCTACCGGTGACTTG
LOC_Os05g32880
OsAffx.14931.1.S1_at--1150--7751Chr05:19172666..19172690 (25 bp)
GGTGACTTGGGCTCAGTGCCGCCAA
LOC_Os05g32880
OsAffx.14931.1.S1_at--951--931Chr05:19172652..19172676 (25 bp)
AGTGCCGCCAAGAGGCCTTAACAAC
LOC_Os05g32880
OsAffx.14931.1.S1_at--910--5591Chr05:19172627..19172651 (25 bp)
GAAATTGCCAGCCATGAGAATACCA
LOC_Os05g32880
Target Sequence 
TACTTCAGGTACTCGTGGTGTGCTTGTTACAAATGAGAACCTCCTGCATGTTGTTAGTGCATCGTTGCCATCAAACATGG
GACAGCCAACGCAACCAAGTCAAAGCTTCTGCACCAATGAATTGGCAGCTAACTACAGTATTATTAGTGATCAAAACCCT
GGGACTAGCCATCCAACTAGCTCTAGTGCTATCAATAATCAAAACTCTAAGACCCAAGAAATGTCTGTTTCACAAACAGT
AGAACTTGGGTGTGGCAACGATGTGATGTTGGATTGGCCAGAATTAGTTGGACTGGAAGATCAGCTGGATAATGATGTGC
TAATGAACAGCTTCTTTGATGGAGACTTACTCCAGCAGGGTGTAGTTACTGCTATAGATGGGACGCAAGAGATGCTTGCT
TTTGATTCTACCGGTGACTTGGGCTCAGTGCCGCCAAGAGGCCTTAACAACGAAATTGCCAGCCATGAGAATACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14931.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis