Browse Element(s) Details


OsAffx.14584.2.S1_at

Description tigr:9633.m03020
TID=OsAffx.14584.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3290011/11Hexose carrier protein HEX6, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32880OsAffx.14931.1.S1_at11/115+19172595..19176745Response regulator receiver domain containing protein
LOC_Os05g32890OsAffx.27127.1.S1_at11/115+19178437..19182453myb-like DNA-binding domain, SHAQKYF class family protein
LOC_Os05g32900OsAffx.14584.2.S1_x_at11/115+19199780..19200384Hexose carrier protein HEX6, putative
LOC_Os05g32900OsAffx.14584.2.S1_at11/115+19199780..19200384Hexose carrier protein HEX6, putative
LOC_Os05g32910NANA5+19201172..19201408hypothetical protein
LOC_Os05g32920OsAffx.940.1.S1_x_at1/115+19203336..19207525hypothetical protein
LOC_Os05g32930NANA5+19208874..19211316hypothetical protein
LOC_Os05g32940Os.26886.1.S1_x_at3/115+19211714..19212821transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g32950Os.26886.1.S1_x_at4/115+19213521..19216732transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g32950Os.26886.3.S1_x_at2/115+19213521..19216732transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0015770biological_processsucrose transport
GO:0005887cellular_componentintegral to plasma membrane
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0008506molecular_functionsucrose:hydrogen symporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
GO:0015145molecular_functionmonosaccharide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14584.2.S1_at--266--9671Chr05:19199856..19199880 (25 bp)
TCAGCGGGGCTCTCCTCAGCGTTGG
LOC_Os05g32900
OsAffx.14584.2.S1_at--947--8691Chr05:19200009..19200033 (25 bp)
TGTGCCACTCTACATGGCTGAAATA
LOC_Os05g32900
OsAffx.14584.2.S1_at--966--7271Chr05:19200010..19200034 (25 bp)
GTGCCACTCTACATGGCTGAAATAG
LOC_Os05g32900
OsAffx.14584.2.S1_at--1034--3311Chr05:19200014..19200038 (25 bp)
CACTCTACATGGCTGAAATAGCGGT
LOC_Os05g32900
OsAffx.14584.2.S1_at--915--9871Chr05:19200019..19200043 (25 bp)
TACATGGCTGAAATAGCGGTGGCGC
LOC_Os05g32900
OsAffx.14584.2.S1_at--648--4751Chr05:19200025..19200049 (25 bp)
GCTGAAATAGCGGTGGCGCGATACC
LOC_Os05g32900
OsAffx.14584.2.S1_at--519--2511Chr05:19200115..19200229 (25 bp)
AACTTCACCGTGGAGAAGACGCCGA
LOC_Os05g32900
OsAffx.14584.2.S1_at--1095--3971Chr05:19200256..19200280 (25 bp)
CGTGACAAGGTCAAGGCATTGTTGC
LOC_Os05g32900
OsAffx.14584.2.S1_at--936--3191Chr05:19200267..19200291 (25 bp)
CAAGGCATTGTTGCAGAAGATCAGA
LOC_Os05g32900
OsAffx.14584.2.S1_at--291--9051Chr05:19200278..19200302 (25 bp)
TGCAGAAGATCAGAGGCGTCGACAC
LOC_Os05g32900
OsAffx.14584.2.S1_at--977--3411Chr05:19200280..19200304 (25 bp)
CAGAAGATCAGAGGCGTCGACACCG
LOC_Os05g32900
Target Sequence 
TCAGCGGGGCTCTCCTCAGCGTTGGCCTCGGCTTCACCACCCAGTCTGTGCCACTCTACATGGCTGAAATAGCGGTGGCG
CGATACCGGGGAGCATTCAGCAATGGCATCCAGTTCAGCCTGTGTCTCGGAGCTCTCGCCGCCACGACTGTGAACTTCAC
CGTGGAGAAGACGCCGAACAGCCTCGTCCAGCAAGGCAAGGACCGTGACAAGGTCAAGGCATTGTTGCAGAAGATCAGAG
GCGTCGACACCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14584.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis