Browse Element(s) Details


OsAffx.11356.1.S1_s_at

Description tigr:9629.m03471
TID=OsAffx.11356.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3676011/11hypothetical protein
LOC_Os04g229901/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g36730NANA1+20717930..20721104hypothetical protein
LOC_Os01g36740Os.53927.1.S2_at8/111+20734485..20736516expressed protein
LOC_Os01g36750NANA1+20738483..20739103retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g36760OsAffx.11356.1.S1_at11/111+20741163..20743109hypothetical protein
LOC_Os01g36760OsAffx.11356.1.S1_s_at11/111+20741163..20743109hypothetical protein
LOC_Os01g36760Os.53927.1.S1_at7/111+20741163..20743109hypothetical protein
LOC_Os01g36766Os.14491.2.S1_x_at1/111+20751517..20754472transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g36772NANA1+20754593..20756446transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g36780NANA1+20757851..20761182transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11356.1.S1_s_at--490--8851Chr01:20741677..20741701 (25 bp)
TGATGAAGCAAACCGCAATGGATGA
LOC_Os01g36760
OsAffx.11356.1.S1_s_at--963--1451Chr01:20741671..20741695 (25 bp)
AGCAAACCGCAATGGATGAAACTAC
LOC_Os01g36760
OsAffx.11356.1.S1_s_at--968--891Chr01:20741329..20741353 (25 bp)
AGGCTGAAGCATTCAACATCCAAGG
LOC_Os01g36760
OsAffx.11356.1.S1_s_at--882--2931Chr01:20741308..20741332 (25 bp)
AAGGCAGCTATCTGAGTCTATCCAG
LOC_Os01g36760
OsAffx.11356.1.S1_s_at--287--5071Chr01:20741305..20741329 (25 bp)
GCAGCTATCTGAGTCTATCCAGTAG
LOC_Os01g36760
OsAffx.11356.1.S1_s_at--440--9471Chr01:20741298..20741322 (25 bp)
TCTGAGTCTATCCAGTAGGGACGCT
LOC_Os01g36760
OsAffx.11356.1.S1_s_at--86--10151Chr01:20741290..20741314 (25 bp)
TATCCAGTAGGGACGCTGAGCATTT
LOC_Os01g36760
OsAffx.11356.1.S1_s_at--486--8911Chr01:20741274..20741298 (25 bp)
TGAGCATTTGCTTGACCTGCCATCA
LOC_Os01g36760
OsAffx.11356.1.S1_s_at--733--10272Chr04:13028599..13028623 (25 bp)
TTTGCTTGACCTGCCATCACAAGGA
LOC_Os04g22990
OsAffx.11356.1.S1_s_at--621--5591Chr01:20741240..20741264 (25 bp)
GAAATATTTGAACCACCAAAGACCA
LOC_Os01g36760
OsAffx.11356.1.S1_s_at--541--5211Chr01:20741195..20741219 (25 bp)
GAATTCAAGACAGCATCTAAGCAAG
LOC_Os01g36760
Target Sequence 
TGATGAAGCAAACCGCAATGGATGAAACTACAACAATCTACGAACCAGAGCAGGTTTTCAAACAAAATAAGCCCCAAAAA
CAGGCTGAAGCATTCAACATCCAAGGCAGCTATCTGAGTCTATCCAGTAGGGACGCTGAGCATTTGCTTGACCTGCCATC
ACAAGGAGAAGAAATATTTGAACCACCAAAGACCAAGAATATGGACTTGTTTGATGAATTCAAGACAGCATCTAAGCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11356.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis