Browse Element(s) Details


OsAffx.11356.1.S1_at

Description tigr:9629.m03471
TID=OsAffx.11356.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3676011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g36730NANA1+20717930..20721104hypothetical protein
LOC_Os01g36740Os.53927.1.S2_at8/111+20734485..20736516expressed protein
LOC_Os01g36750NANA1+20738483..20739103retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g36760OsAffx.11356.1.S1_at11/111+20741163..20743109hypothetical protein
LOC_Os01g36760OsAffx.11356.1.S1_s_at11/111+20741163..20743109hypothetical protein
LOC_Os01g36760Os.53927.1.S1_at7/111+20741163..20743109hypothetical protein
LOC_Os01g36766Os.14491.2.S1_x_at1/111+20751517..20754472transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g36772NANA1+20754593..20756446transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g36780NANA1+20757851..20761182transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11356.1.S1_at--920--5251Chr01:20743033..20743057 (25 bp)
GAATGGGGAGTTGCCGATTATTTTT
LOC_Os01g36760
OsAffx.11356.1.S1_at--657--10371Chr01:20743011..20743035 (25 bp)
TTTTTTCCCTCTCAAACTTGATCAT
LOC_Os01g36760
OsAffx.11356.1.S1_at--367--10651Chr01:20743007..20743031 (25 bp)
TTCCCTCTCAAACTTGATCATGGGT
LOC_Os01g36760
OsAffx.11356.1.S1_at--316--3771Chr01:20743003..20743027 (25 bp)
CTCTCAAACTTGATCATGGGTGGGA
LOC_Os01g36760
OsAffx.11356.1.S1_at--1026--2391Chr01:20742998..20743022 (25 bp)
AAACTTGATCATGGGTGGGAGGATA
LOC_Os01g36760
OsAffx.11356.1.S1_at--369--351Chr01:20742059..20742080 (22 bp)
ATAAGGGCTCGCAGCAGTGCATGTC
LOC_Os01g36760
OsAffx.11356.1.S1_at--534--1531Chr01:20742047..20742071 (25 bp)
AGCAGTGCATGTCGCCGCTATTAAC
LOC_Os01g36760
OsAffx.11356.1.S1_at--541--8111Chr01:20742010..20742034 (25 bp)
GGACTGGGGATTGCCGATTCTTTTT
LOC_Os01g36760
OsAffx.11356.1.S1_at--214--10371Chr01:20741988..20742012 (25 bp)
TTTTTTCCTCTCAAACACGATCGTG
LOC_Os01g36760
OsAffx.11356.1.S1_at--826--10351Chr01:20741987..20742011 (25 bp)
TTTTTCCTCTCAAACACGATCGTGG
LOC_Os01g36760
OsAffx.11356.1.S1_at--60--2671Chr01:20741342..20741633 (25 bp)
AAGCCCCAAAAACAGGCTGAAGCAT
LOC_Os01g36760
Target Sequence 
GAATGGGGAGTTGCCGATTATTTTTTTTCCCTCTCAAACTTGATCATGGGTGGGAGGATAAGGGCTCGCAGCAGTGCATG
TCGCCGCTATTAACGCCGCACCGTGGGGACTGGGGATTGCCGATTCTTTTTTTTCCTCTCAAACACGATCGTGGATGGGA
GGATAAGGATTGCTCTGCAGAAGATATGATGAAGCAAACCGCAATGGATGAAACTACAACAATCTACGAACCAGAGCAGG
TTTTCAAACAAAATAAGCCCCAAAAACAGGCTGAAGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11356.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis