Browse Element(s) Details


Os.46811.1.S1_at

Description gb:AK110534.1
DB_XREF= gi:32995743
TID=Os.46811.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46811 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cellulose synthase (OSJNBa0035H01.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-168-A07, full insert sequence.
FL= gb:AK110534.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4275011/11cellulose synthase-like protein D4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42710Os.11985.1.S1_at11/1110+22705656..22710023Poly polymerase catalytic domain containing protein, expressed
LOC_Os10g42710Os.11985.1.S1_a_at11/1110+22705656..22710023Poly polymerase catalytic domain containing protein, expressed
LOC_Os10g42710Os.11985.2.A1_a_at11/1110+22705656..22710023Poly polymerase catalytic domain containing protein, expressed
LOC_Os10g42720Os.25624.1.S1_at11/1110+22715003..22721050Glycerol-3-phosphate acyltransferase, chloroplast precursor, putative, expressed
LOC_Os10g42730Os.5962.1.S1_at11/1110+22722457..22731085VHS domain-containing protein, putative, expressed
LOC_Os10g42730Os.9977.2.S1_at11/1110+22722457..22731085VHS domain-containing protein, putative, expressed
LOC_Os10g42730Os.9977.1.S1_x_at10/1110+22722457..22731085VHS domain-containing protein, putative, expressed
LOC_Os10g42730Os.51613.1.S1_x_at5/1110+22722457..22731085VHS domain-containing protein, putative, expressed
LOC_Os10g42740Os.53927.1.S2_at2/1110+22724786..22731082expressed protein
LOC_Os10g42740OsAffx.15875.1.S1_at2/1110+22724786..22731082expressed protein
LOC_Os10g42750Os.46811.1.S1_at11/1110+22732764..22736602cellulose synthase-like protein D4, putative, expressed
LOC_Os10g42754Os.46116.1.S1_x_at11/1110+22736781..22740064expressed protein
LOC_Os10g42754Os.57384.1.S1_at10/1110+22736781..22740064expressed protein
LOC_Os10g42760NANA10+22740066..22741961pentatricopeptide, putative, expressed
LOC_Os10g42770Os.46857.1.S2_at11/1110+22743374..22745588expressed protein
LOC_Os10g42770Os.46857.1.S1_at11/1110+22743374..22745588expressed protein
LOC_Os10g42780Os.38152.1.S1_x_at11/1110+22745679..22749384LrgB-like family protein, expressed
LOC_Os10g42780Os.38152.1.S1_at11/1110+22745679..22749384LrgB-like family protein, expressed
LOC_Os10g42790Os.19940.1.S1_s_at11/1110+22749779..22752607Cytidylyltransferase family protein, expressed
LOC_Os10g42790Os.19940.1.S1_at11/1110+22749779..22752607Cytidylyltransferase family protein, expressed
LOC_Os10g42800OsAffx.30755.2.S1_at11/1110+22753530..22756895AMP-binding enzyme family protein
LOC_Os10g42800OsAffx.30755.1.S1_at11/1110+22753530..22756895AMP-binding enzyme family protein
LOC_Os10g42800OsAffx.30755.1.S1_x_at11/1110+22753530..22756895AMP-binding enzyme family protein
LOC_Os10g42810OsAffx.30756.1.S1_at11/1110+22757595..22757815hypothetical protein
LOC_Os10g42820Os.2998.1.S1_at11/1110+22758413..22763725early-responsive to dehydration protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000271biological_processpolysaccharide biosynthesis
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0005783cellular_componentendoplasmic reticulum
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016759molecular_functioncellulose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46811.1.S1_at--316--5951Chr10:22736018..22736042 (25 bp)
GAGCAAGCTTCTCGGTGGAGTCTTC
LOC_Os10g42750
Os.46811.1.S1_at--430--471Chr10:22736154..22736178 (25 bp)
ATCTCCTTGCTCTGGATTGCAATCA
LOC_Os10g42750
Os.46811.1.S1_at--762--8571Chr10:22736166..22736190 (25 bp)
TGGATTGCAATCAAGCCTCCTTCTG
LOC_Os10g42750
Os.46811.1.S1_at--937--9691Chr10:22736202..22736226 (25 bp)
TCACAGCTAGGAGGATCCTTCTCTT
LOC_Os10g42750
Os.46811.1.S1_at--518--3651Chr10:22736219..22736243 (25 bp)
CTTCTCTTTCCCCTGATATACATAT
LOC_Os10g42750
Os.46811.1.S1_at--109--9491Chr10:22736282..22736306 (25 bp)
TCTGCTATCTGCTTGCTTAGGATTC
LOC_Os10g42750
Os.46811.1.S1_at--541--7931Chr10:22736301..22736325 (25 bp)
GGATTCATTCATATGCTAGCTGGTC
LOC_Os10g42750
Os.46811.1.S1_at--1012--9991Chr10:22736317..22736341 (25 bp)
TAGCTGGTCGATCGAGCTACCGCAG
LOC_Os10g42750
Os.46811.1.S1_at--1077--711Chr10:22736352..22736376 (25 bp)
ATGATCATATCACCCACAGTCTGTT
LOC_Os10g42750
Os.46811.1.S1_at--746--3311Chr10:22736366..22736390 (25 bp)
CACAGTCTGTTTGCTTCATGGAGCA
LOC_Os10g42750
Os.46811.1.S1_at--203--1291Chr10:22736412..22736436 (25 bp)
AGATCTGCTTCTTCACAGTGAGTGA
LOC_Os10g42750
Target Sequence 
GAGCAAGCTTCTCGGTGGAGTCTTCTTCAGCTTCTGGGTCCTCGCGCATCTCTACCCCTTCGCCAAGGGCCTCATGGGCA
GGAGGGGAAGGACACCCACCATCGTCTACGTCTGGTCTGGCCTCGTCGCCATCACCATCTCCTTGCTCTGGATTGCAATC
AAGCCTCCTTCTGCACAAGCCAACTCACAGCTAGGAGGATCCTTCTCTTTCCCCTGATATACATATATTCTCATTCCNCA
CACCCNATCCAGACTACCTGTCTCTCTGCTATCTGCTTGCTTAGGATTCATTCATATGCTAGCTGGTCGATCGAGCTACC
GCAGCCTAGGGAACATGATCATATCACCCACAGTCTGTTTGCTTCATGGAGCANACTGCACTTCACCCCAGTCCAGATCT
GCTTCTTCACAGTGAGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46811.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis