Browse Element(s) Details


Os.11985.2.A1_a_at

Description gb:CB634896
DB_XREF= gi:29629887
DB_XREF=OSIIEb14L19.r
CLONE=OSIIEb14L19
TID=Os.11985.2
CNT=35
FEA=EST
TIER=Stack
STK=11
UG=Os.11985 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative CEO protein (OSJNBa0035H01.4), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4271011/11Poly polymerase catalytic domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42670Os.13874.1.S1_x_at11/1110+22678957..22682117xyloglucan endotransglucosylase/hydrolase protein 28precursor, putative, expressed
LOC_Os10g42690Os.7130.1.S1_at11/1110+22696125..22702067transcription factor jumonji, putative, expressed
LOC_Os10g42690Os.7130.2.S1_x_at11/1110+22696125..22702067transcription factor jumonji, putative, expressed
LOC_Os10g42700Os.15736.1.S1_at11/1110+22702516..22705386expressed protein
LOC_Os10g42710Os.11985.1.S1_at11/1110+22705656..22710023Poly polymerase catalytic domain containing protein, expressed
LOC_Os10g42710Os.11985.1.S1_a_at11/1110+22705656..22710023Poly polymerase catalytic domain containing protein, expressed
LOC_Os10g42710Os.11985.2.A1_a_at11/1110+22705656..22710023Poly polymerase catalytic domain containing protein, expressed
LOC_Os10g42720Os.25624.1.S1_at11/1110+22715003..22721050Glycerol-3-phosphate acyltransferase, chloroplast precursor, putative, expressed
LOC_Os10g42730Os.5962.1.S1_at11/1110+22722457..22731085VHS domain-containing protein, putative, expressed
LOC_Os10g42730Os.9977.2.S1_at11/1110+22722457..22731085VHS domain-containing protein, putative, expressed
LOC_Os10g42730Os.9977.1.S1_x_at10/1110+22722457..22731085VHS domain-containing protein, putative, expressed
LOC_Os10g42730Os.51613.1.S1_x_at5/1110+22722457..22731085VHS domain-containing protein, putative, expressed
LOC_Os10g42740Os.53927.1.S2_at2/1110+22724786..22731082expressed protein
LOC_Os10g42740OsAffx.15875.1.S1_at2/1110+22724786..22731082expressed protein
LOC_Os10g42750Os.46811.1.S1_at11/1110+22732764..22736602cellulose synthase-like protein D4, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000303biological_processresponse to superoxide
GO:0006979biological_processresponse to oxidative stress
GO:0009723biological_processresponse to ethylene stimulus
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0009867biological_processjasmonic acid mediated signaling pathway
GO:0009873biological_processethylene mediated signaling pathway
GO:0010193biological_processresponse to ozone
GO:0012501biological_processprogrammed cell death
GO:0005634cellular_componentnucleus
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11985.2.A1_a_at--87--951Chr10:22706656..22706680 (25 bp)
AGGACATGAACCTTCAGGCTTCTCC
LOC_Os10g42710
Os.11985.2.A1_a_at--22--7992Chr10:16383180..16383228 (24 bp)
GGATGCCTTTCTCCATGTTATTTGC
NONE
Os.11985.2.A1_a_at--1155--511Chr10:22706038..22706321 (25 bp)
ATGCGACTCCAAGATAAGTTGCCCC
LOC_Os10g42710
Os.11985.2.A1_a_at--361--10111Chr10:22706012..22706036 (25 bp)
TATGTCGAGGCATGAAGCACCCAAA
LOC_Os10g42710
Os.11985.2.A1_a_at--100--2371Chr10:22705965..22705989 (25 bp)
AAACCATGAAGTCGTCGGTGCGGAT
LOC_Os10g42710
Os.11985.2.A1_a_at--893--5151Chr10:22705930..22705954 (25 bp)
GCAACTGGCCGACTTGACTAGTGGA
LOC_Os10g42710
Os.11985.2.A1_a_at--878--7171Chr10:22705882..22705906 (25 bp)
GTCTGCGTCTGTATATGATGCGGGT
LOC_Os10g42710
Os.11985.2.A1_a_at--38--6251Chr10:22705866..22705890 (25 bp)
GATGCGGGTTTGTCTTTTCGGTCCT
LOC_Os10g42710
Os.11985.2.A1_a_at--644--9431Chr10:22705849..22705873 (25 bp)
TCGGTCCTAGGATTCATGTTGTCAA
LOC_Os10g42710
Os.11985.2.A1_a_at--442--2811Chr10:22705826..22705850 (25 bp)
AAGATTTCTGTCATCGGTTTCCGAT
LOC_Os10g42710
Os.11985.2.A1_a_at--946--711Chr10:22705793..22705817 (25 bp)
ATGATTTCAGCTTTACTCGTGGACC
LOC_Os10g42710
Target Sequence 
AGGACATGAACCTTCAGGCTTCTCCAGCATTGGGAGGTCATTATGAAGCCCCCATGTTAGGAGATAAAGTGGAAAGGGCT
CCAAGCACNCCTTGGATGCCTTTCTCCATGTTATTTGCAGCGATTTCAACCAAAGTTTCTGCTGAGAATATGGACATGGT
CAACAGTTGTTACGAAGAATTCAAGAGCAAGAAAATAAGCCGAGTCGACCTAGTGAAGAAGTTAAGGCATATAGTTGGTG
ACAGAATGCTTATATCAACAATAATGCGACTCCAAGATAAGTTGCCCCCTATGTCGAGGCATGAAGCACCCAAACACGTG
GGCCAANATGATGGCTAAACCATGAAGTCGTCGGTGCGGATGGTGAGAGAAGCAACTGGCCGACTTGACTAGTGGAGAGA
AGCTTATCTCACATAAGTTGTCTGCGTCTGTATATGATGCGGGTTTGTCTTTTCGGTCCTAGGATTCATGTTGTCAAGAT
TTCTGTCATCGGTTTCCGATGCGAAATGATGATTTCAGCTTTACTCGTGGACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11985.2.A1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis