Browse Element(s) Details


Os.7130.1.S1_at

Description gb:AK073475.1
DB_XREF= gi:32983498
TID=Os.7130.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7130 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative retinoblastoma binding protein (OSJNBa0035H01.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033044E04, full insert sequence.
FL= gb:AK073475.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4269011/11transcription factor jumonji, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42660Os.12915.1.S1_at11/1110+22675857..22677978expressed protein
LOC_Os10g42670Os.13874.1.S1_x_at11/1110+22678957..22682117xyloglucan endotransglucosylase/hydrolase protein 28precursor, putative, expressed
LOC_Os10g42690Os.7130.1.S1_at11/1110+22696125..22702067transcription factor jumonji, putative, expressed
LOC_Os10g42690Os.7130.2.S1_x_at11/1110+22696125..22702067transcription factor jumonji, putative, expressed
LOC_Os10g42700Os.15736.1.S1_at11/1110+22702516..22705386expressed protein
LOC_Os10g42710Os.11985.1.S1_at11/1110+22705656..22710023Poly polymerase catalytic domain containing protein, expressed
LOC_Os10g42710Os.11985.1.S1_a_at11/1110+22705656..22710023Poly polymerase catalytic domain containing protein, expressed
LOC_Os10g42710Os.11985.2.A1_a_at11/1110+22705656..22710023Poly polymerase catalytic domain containing protein, expressed
LOC_Os10g42720Os.25624.1.S1_at11/1110+22715003..22721050Glycerol-3-phosphate acyltransferase, chloroplast precursor, putative, expressed
LOC_Os10g42730Os.5962.1.S1_at11/1110+22722457..22731085VHS domain-containing protein, putative, expressed
LOC_Os10g42730Os.9977.2.S1_at11/1110+22722457..22731085VHS domain-containing protein, putative, expressed
LOC_Os10g42730Os.9977.1.S1_x_at10/1110+22722457..22731085VHS domain-containing protein, putative, expressed
LOC_Os10g42730Os.51613.1.S1_x_at5/1110+22722457..22731085VHS domain-containing protein, putative, expressed
LOC_Os10g42740Os.53927.1.S2_at2/1110+22724786..22731082expressed protein
LOC_Os10g42740OsAffx.15875.1.S1_at2/1110+22724786..22731082expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7130.1.S1_at--452--3311Chr10:22701683..22701707 (25 bp)
CACAGAAGCTGACTGACTTTAGAAG
LOC_Os10g42690
Os.7130.1.S1_at--664--5391Chr10:22701687..22701711 (25 bp)
GAAGCTGACTGACTTTAGAAGGCTG
LOC_Os10g42690
Os.7130.1.S1_at--1008--9191Chr10:22701740..22701764 (25 bp)
TCCAATTTGAGGCACATCTAGGCAC
LOC_Os10g42690
Os.7130.1.S1_at--298--3111Chr10:22701743..22701767 (25 bp)
AATTTGAGGCACATCTAGGCACGGT
LOC_Os10g42690
Os.7130.1.S1_at--1101--10251Chr10:22701745..22701769 (25 bp)
TTTGAGGCACATCTAGGCACGGTTA
LOC_Os10g42690
Os.7130.1.S1_at--570--5651Chr10:22701775..22701799 (25 bp)
GACAGACACATGACGATTCTTGTTG
LOC_Os10g42690
Os.7130.1.S1_at--1047--3411Chr10:22701777..22701801 (25 bp)
CAGACACATGACGATTCTTGTTGCT
LOC_Os10g42690
Os.7130.1.S1_at--229--5631Chr10:22701779..22701803 (25 bp)
GACACATGACGATTCTTGTTGCTGG
LOC_Os10g42690
Os.7130.1.S1_at--113--2191Chr10:22701780..22701804 (25 bp)
ACACATGACGATTCTTGTTGCTGGA
LOC_Os10g42690
Os.7130.1.S1_at--417--4771Chr10:22701824..22701848 (25 bp)
GCTGCTGTTTGATGCCTGCACTGCA
LOC_Os10g42690
Os.7130.1.S1_at--370--3831Chr10:22701825..22701849 (25 bp)
CTGCTGTTTGATGCCTGCACTGCAA
LOC_Os10g42690
Target Sequence 
CACAGAAGCTGACTGACTTTAGAAGGCTGGTTAATCGATTCTTTGTGCAGCAGTGCCTCCAATTTGAGGCACATCTAGGC
ACGGTTAGAAGAGACAGACACATGACGATTCTTGTTGCTGGAGGTTCTGGGTCACTGCTTTGCTGCTGTTTGATGCCTGC
ACTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7130.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis