Browse Element(s) Details


Os.13874.1.S1_x_at

Description gb:AK068365.1
DB_XREF= gi:32978383
TID=Os.13874.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13874 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative endoxyloglucan transferase (OSJNBa0035H01.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013146O14, full insert sequence.
FL= gb:AK068365.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4267011/11xyloglucan endotransglucosylase/hydrolase protein 28precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42620Os.9496.1.S1_at11/1110+22651990..22656522NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os10g42630Os.17590.1.S1_a_at11/1110+22657161..22660201expressed protein
LOC_Os10g42640OsAffx.18609.1.S1_at11/1110+22661332..22664456expressed protein
LOC_Os10g42650Os.7820.1.S1_x_at11/1110+22667552..22669442transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g42650Os.54601.1.S1_s_at11/1110+22667552..22669442transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g42660Os.12915.1.S1_at11/1110+22675857..22677978expressed protein
LOC_Os10g42670Os.13874.1.S1_x_at11/1110+22678957..22682117xyloglucan endotransglucosylase/hydrolase protein 28precursor, putative, expressed
LOC_Os10g42690Os.7130.1.S1_at11/1110+22696125..22702067transcription factor jumonji, putative, expressed
LOC_Os10g42690Os.7130.2.S1_x_at11/1110+22696125..22702067transcription factor jumonji, putative, expressed
LOC_Os10g42700Os.15736.1.S1_at11/1110+22702516..22705386expressed protein
LOC_Os10g42710Os.11985.1.S1_at11/1110+22705656..22710023Poly polymerase catalytic domain containing protein, expressed
LOC_Os10g42710Os.11985.1.S1_a_at11/1110+22705656..22710023Poly polymerase catalytic domain containing protein, expressed
LOC_Os10g42710Os.11985.2.A1_a_at11/1110+22705656..22710023Poly polymerase catalytic domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010087biological_processvascular tissue development (sensu Tracheophyta)
GO:0016762molecular_functionxyloglucan:xyloglucosyl transferase activity
GO:0016798molecular_functionhydrolase activity, acting on glycosyl bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13874.1.S1_x_at--113--7091Chr10:22679364..22679388 (25 bp)
GTCACCGGTGGTACTGACGACGACC
LOC_Os10g42670
Os.13874.1.S1_x_at--823--4851Chr10:22679234..22679258 (25 bp)
GCTACGACACGGTGCGCTACAACGG
LOC_Os10g42670
Os.13874.1.S1_x_at--747--5951Chr10:22679175..22679199 (25 bp)
GAGCAAGACAACTTCCACGCATGGG
LOC_Os10g42670
Os.13874.1.S1_x_at--56--7571Chr10:22679152..22679176 (25 bp)
GGGCGAGTCCAAGCGTGTCATCAAC
LOC_Os10g42670
Os.13874.1.S1_x_at--437--7131Chr10:22679136..22679160 (25 bp)
GTCATCAACAGCAGATCCAGTTCCA
LOC_Os10g42670
Os.13874.1.S1_x_at--925--9611Chr10:22679091..22679115 (25 bp)
TCAGGCGTGCGCATCGACTAATTTA
LOC_Os10g42670
Os.13874.1.S1_x_at--962--6991Chr10:22679059..22679083 (25 bp)
GTACTGTGTAATCTCAATCATGCAT
LOC_Os10g42670
Os.13874.1.S1_x_at--133--651Chr10:22679040..22679064 (25 bp)
ATGCATTATTCCACCAGTTGATCCT
LOC_Os10g42670
Os.13874.1.S1_x_at--866--1711Chr10:22679028..22679052 (25 bp)
ACCAGTTGATCCTGCTTCTAGATGA
LOC_Os10g42670
Os.13874.1.S1_x_at--870--6991Chr10:22678989..22679013 (25 bp)
GTACGTACGTGCACACTGACACATT
LOC_Os10g42670
Os.13874.1.S1_x_at--349--5631Chr10:22678972..22678996 (25 bp)
GACACATTTTCCAGTTCATATATAT
LOC_Os10g42670
Target Sequence 
GTCACCGGTGGTACTGACGACGACCACTGCGCCGCCATGGGCCTGATGACGTCGGAGGTGGCCGTGATGACGCCGGCGAA
GCGCGGCTCCATGCGGCGGTTCCGGTCGCGGCACCTGACGTACAGCGCGTGCTACGACACGGTGCGCTACAACGGCACCG
GCGTCGTCTTCCCGGAGTGCGACGAGTCGGAGCAAGACAACTTCCACGCATGGGGCGAGTCCAAGCGTGTCATCAACAGC
AGATCCAGTTCCAGCGCCACATACGCCACTGGTTCAGGCGTGCGCATCGACTAATTTATTTACTAGTACTGTGTAATCTC
AATCATGCATTATTCCACCAGTTGATCCTGCTTCTAGATGATCGATGATGAGTTTGTACGTACGTGCACACTGACACATT
TTCCAGTTCATATATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13874.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis