Browse Element(s) Details


Os.54601.1.S1_s_at

Description gb:AK106138.1
DB_XREF= gi:32991347
TID=Os.54601.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54601 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-207-G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-207-G06, full insert sequence.
FL= gb:AK106138.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4265011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42620Os.9496.1.S1_at11/1110+22651990..22656522NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os10g42630Os.17590.1.S1_a_at11/1110+22657161..22660201expressed protein
LOC_Os10g42640OsAffx.18609.1.S1_at11/1110+22661332..22664456expressed protein
LOC_Os10g42650Os.7820.1.S1_x_at11/1110+22667552..22669442transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g42650Os.54601.1.S1_s_at11/1110+22667552..22669442transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g42660Os.12915.1.S1_at11/1110+22675857..22677978expressed protein
LOC_Os10g42670Os.13874.1.S1_x_at11/1110+22678957..22682117xyloglucan endotransglucosylase/hydrolase protein 28precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54601.1.S1_s_at--791--8051Chr10:22668037..22668061 (25 bp)
GGAGAGAGATGTAGTGCACATCGCT
LOC_Os10g42650
Os.54601.1.S1_s_at--127--2151Chr10:22667978..22668002 (25 bp)
ACAGCCGGGTAACATTTGACGCTAG
LOC_Os10g42650
Os.54601.1.S1_s_at--792--10751Chr10:22667963..22667987 (25 bp)
TTGACGCTAGGGTTGTAGCTACTGT
LOC_Os10g42650
Os.54601.1.S1_s_at--940--7911Chr10:22667953..22667977 (25 bp)
GGTTGTAGCTACTGTGAGGTGAATT
LOC_Os10g42650
Os.54601.1.S1_s_at--981--8671Chr10:22667941..22667965 (25 bp)
TGTGAGGTGAATTGGTCGCTGCCCC
LOC_Os10g42650
Os.54601.1.S1_s_at--884--8991Chr10:22667934..22667958 (25 bp)
TGAATTGGTCGCTGCCCCGGAGATG
LOC_Os10g42650
Os.54601.1.S1_s_at--663--1031Chr10:22667904..22667928 (25 bp)
AGGTGGGTTGCAGCTTCGGACACCA
LOC_Os10g42650
Os.54601.1.S1_s_at--665--10611Chr10:22667890..22667914 (25 bp)
TTCGGACACCACTATTTGTTGCTCT
LOC_Os10g42650
Os.54601.1.S1_s_at--892--3311Chr10:22667881..22667905 (25 bp)
CACTATTTGTTGCTCTCACTTACTG
LOC_Os10g42650
Os.54601.1.S1_s_at--953--4811Chr10:22667870..22667894 (25 bp)
GCTCTCACTTACTGCTTGTGTGATT
LOC_Os10g42650
Os.54601.1.S1_s_at--312--9751Chr10:22667772..22667796 (25 bp)
TAATTCATTCACTTCTCTTAGCTGC
LOC_Os10g42650
Target Sequence 
GGAGAGAGATGTAGTGCACATCGCTCGCCGCAGCGCAGCACAAAGCTCCCGTGAAGGCCACAGCCGGGTAACATTTGACG
CTAGGGTTGTAGCTACTGTGAGGTGAATTGGTCGCTGCCCCGGAGATGGGCGCAGGTGGGTTGCAGCTTCGGACACCACT
ATTTGTTGCTCTCACTTACTGCTTGTGTGATTAGTCAGTCATTATATCAGTCAGTCTATAAGGTGGTTGCTCATATATTT
GTAATTGTATAACTGGGAAAGTTTTTAATTCATTCACTTCTCTTAGCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54601.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis