Browse Element(s) Details


Os.17590.1.S1_a_at

Description gb:AK070910.1
DB_XREF= gi:32980933
TID=Os.17590.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17590 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0027L23.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023065M03, full insert sequence.
FL= gb:AK070910.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4263011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42600Os.35344.18.S1_x_at11/1110+22627429..22634184transposon protein, putative, Mutator sub-class
LOC_Os10g42600Os.35344.3.S1_x_at9/1110+22627429..22634184transposon protein, putative, Mutator sub-class
LOC_Os10g42600OsAffx.22940.5.S1_x_at4/1110+22627429..22634184transposon protein, putative, Mutator sub-class
LOC_Os10g42600OsAffx.22940.5.S1_at3/1110+22627429..22634184transposon protein, putative, Mutator sub-class
LOC_Os10g42610Os.5318.1.S1_a_at11/1110+22634395..22635931expressed protein
LOC_Os10g42620Os.9496.1.S1_at11/1110+22651990..22656522NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os10g42630Os.17590.1.S1_a_at11/1110+22657161..22660201expressed protein
LOC_Os10g42640OsAffx.18609.1.S1_at11/1110+22661332..22664456expressed protein
LOC_Os10g42650Os.7820.1.S1_x_at11/1110+22667552..22669442transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g42650Os.54601.1.S1_s_at11/1110+22667552..22669442transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g42660Os.12915.1.S1_at11/1110+22675857..22677978expressed protein
LOC_Os10g42670Os.13874.1.S1_x_at11/1110+22678957..22682117xyloglucan endotransglucosylase/hydrolase protein 28precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17590.1.S1_a_at--626--5651Chr10:22658271..22658295 (25 bp)
GACATGCAAGATTCGTTACTCCAAA
LOC_Os10g42630
Os.17590.1.S1_a_at--607--451Chr10:22658246..22658270 (25 bp)
ATCTACATTTCATTCTCAGCACGTC
LOC_Os10g42630
Os.17590.1.S1_a_at--47--9671Chr10:22658231..22658255 (25 bp)
TCAGCACGTCGCCTATGTGGGACAG
LOC_Os10g42630
Os.17590.1.S1_a_at--301--2331Chr10:22657942..22657966 (25 bp)
AAAGTTTGCCGATTCATAGTCCAGA
LOC_Os10g42630
Os.17590.1.S1_a_at--157--5311Chr10:22657474..22657498 (25 bp)
GAAGGAACTTCATCCTCTGAATGGA
LOC_Os10g42630
Os.17590.1.S1_a_at--219--2251Chr10:22657422..22657446 (25 bp)
AAATTCTTTTTCAGCCATTGCACTC
LOC_Os10g42630
Os.17590.1.S1_a_at--1152--10711Chr10:22657365..22657389 (25 bp)
TTGCTTCTGTGACACTGAGTGCCTA
LOC_Os10g42630
Os.17590.1.S1_a_at--443--7691Chr10:22657318..22657342 (25 bp)
GGGTACTTCCTGTTGCAGTAGTATA
LOC_Os10g42630
Os.17590.1.S1_a_at--403--6891Chr10:22657298..22657322 (25 bp)
GTATATAGAGTACCTTCCTGGCTTC
LOC_Os10g42630
Os.17590.1.S1_a_at--555--7311Chr10:22657268..22657292 (25 bp)
GTGCTCCTCAGTTAAAGTTTGTCTT
LOC_Os10g42630
Os.17590.1.S1_a_at--1--6871Chr10:22657252..22657276 (25 bp)
GTTTGTCTTGTTGTTTCTGTACACC
LOC_Os10g42630
Target Sequence 
GACATGCAAGATTCGTTACTCCAAAATCTACATTTCATTCTCAGCACGTCGCCTATGTGGGACAGGTTGGAACTCAAAGG
GGACAGGAATATTCTTGGTGAATTCATTGAATTCAAAGGCAGGCACGATGATATTCAGGCCTTGAAATGTCTGAAGAGAT
CAAAAGTTTGCCGATTCATAGTCCAGAAATCAACTCTGTTTGGAGGTTTTGGTCGGTCAAGAGTGCAAATATTGTATTCA
CCACGAGATTATCGTGCTGAAGGAACTTCATCCTCTGAATGGAAAGAGATATCAGTGAAACAATATACAGAAATTCTTTT
TCAGCCATTGCACTCGAAAAAAGTTAAGAAGTTCAAGCTGTCAAGTGTTGCTTCTGTGACACTGAGTGCCTAGTGAGTTG
AAATTTTATCCACGGGGTACTTCCTGTTGCAGTAGTATATAGAGTACCTTCCTGGCTTCTGTATGTGCTCCTCAGTTAAA
GTTTGTCTTGTTGTTTCTGTACACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17590.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis