Browse Element(s) Details


Os.7820.1.S1_x_at

Description gb:NM_197890.1
DB_XREF= gi:37537137
TID=Os.7820.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.7820 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative hydroxyproline-rich glycoprotein (OSJNBa0027L23.23), mRNA.
PROD=putative hydroxyproline-rich glycoprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4265011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42620Os.9496.1.S1_at11/1110+22651990..22656522NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os10g42630Os.17590.1.S1_a_at11/1110+22657161..22660201expressed protein
LOC_Os10g42640OsAffx.18609.1.S1_at11/1110+22661332..22664456expressed protein
LOC_Os10g42650Os.7820.1.S1_x_at11/1110+22667552..22669442transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g42650Os.54601.1.S1_s_at11/1110+22667552..22669442transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g42660Os.12915.1.S1_at11/1110+22675857..22677978expressed protein
LOC_Os10g42670Os.13874.1.S1_x_at11/1110+22678957..22682117xyloglucan endotransglucosylase/hydrolase protein 28precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7820.1.S1_x_at--908--7171Chr10:22668464..22668488 (25 bp)
GTCTGGGCTGACTCACCGGTCACCG
LOC_Os10g42650
Os.7820.1.S1_x_at--996--4452Chr05:4831276..4831300 (25 bp)
GCCTACATGCGCATCCTCGAGAACT
NONE
Os.7820.1.S1_x_at--404--9111Chr10:22668360..22668384 (25 bp)
TGCTGCTACGGGACAACAGGCCCCT
LOC_Os10g42650
Os.7820.1.S1_x_at--293--5891Chr10:22668273..22668297 (25 bp)
GAGCGGCTTTCTCAACCTGCTCTCG
LOC_Os10g42650
Os.7820.1.S1_x_at--662--4771Chr10:22668162..22668186 (25 bp)
GCTGCCGGGCACTGGGATCCTGGGT
LOC_Os10g42650
Os.7820.1.S1_x_at--433--6371Chr10:22668147..22668171 (25 bp)
GATCCTGGGTCCAGGGCCCATGGCT
LOC_Os10g42650
Os.7820.1.S1_x_at--295--9451Chr10:22668106..22668130 (25 bp)
TCTGGTTCCCGCAGTCGCCGTCAGG
LOC_Os10g42650
Os.7820.1.S1_x_at--844--5011Chr10:22668096..22668120 (25 bp)
GCAGTCGCCGTCAGGGCTGCTCTCG
LOC_Os10g42650
Os.7820.1.S1_x_at--349--4251Chr10:22668070..22668094 (25 bp)
CCTCCGGGTTCTTGCCAATTCTGAG
LOC_Os10g42650
Os.7820.1.S1_x_at--870--6731Chr10:22668063..22668087 (25 bp)
GTTCTTGCCAATTCTGAGCCCAAGG
LOC_Os10g42650
Os.7820.1.S1_x_at--742--1411Chr10:22668001..22668020 (20 bp)
AGACAAAAGCTCCCGTGAAGGCCAC
LOC_Os10g42650
Target Sequence 
GTCTGGGCTGACTCACCGGTCACCGCCTACATGCGCATCCTCGAGAACTCCCTCTTCAGCGCCACCCCGCCAGGCGCCGC
CGCCGCCGCTGCCGCTGCCGCCGCTGCTGCTACGGGACAACAGGCCCCTCCGCACCACCCTCATCCCCCACCCCCGCCGC
CGGTGCCGTCGCCAGGGATACTCCCCTCGCCGAGCGGCTTTCTCAACCTGCTCTCGCCCACGCCCAGGTCGCCCTACCCG
CTGCTATCGCCGGGCTTCCAGCACCCGGGGCCACTCACGCCCAACTTCCCCGCGCTGTCGCCGCTGCCGGGCACTGGGAT
CCTGGGTCCAGGGCCCATGGCTCCGNCGTCGCCTGGCCTCTGGTTCCCGCAGTCGCCGTCAGGGCTGCTCTCGCCCTCCG
GGTTCTTGCCAATTCTGAGCCCAAGGTGGAGAGAGATGTAGTGCACATNGCTNGCCGCAGCGCAGACAAAAGCTCCCGTG
AAGGCCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7820.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis