Browse Element(s) Details


Os.7130.2.S1_x_at

Description gb:AU032629
DB_XREF= gi:3768602
DB_XREF=AU032629
CLONE=S12507_6Z
TID=Os.7130.2
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.7130 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative retinoblastoma binding protein (OSJNBa0035H01.2), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4269011/11transcription factor jumonji, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42660Os.12915.1.S1_at11/1110+22675857..22677978expressed protein
LOC_Os10g42670Os.13874.1.S1_x_at11/1110+22678957..22682117xyloglucan endotransglucosylase/hydrolase protein 28precursor, putative, expressed
LOC_Os10g42690Os.7130.1.S1_at11/1110+22696125..22702067transcription factor jumonji, putative, expressed
LOC_Os10g42690Os.7130.2.S1_x_at11/1110+22696125..22702067transcription factor jumonji, putative, expressed
LOC_Os10g42700Os.15736.1.S1_at11/1110+22702516..22705386expressed protein
LOC_Os10g42710Os.11985.1.S1_at11/1110+22705656..22710023Poly polymerase catalytic domain containing protein, expressed
LOC_Os10g42710Os.11985.1.S1_a_at11/1110+22705656..22710023Poly polymerase catalytic domain containing protein, expressed
LOC_Os10g42710Os.11985.2.A1_a_at11/1110+22705656..22710023Poly polymerase catalytic domain containing protein, expressed
LOC_Os10g42720Os.25624.1.S1_at11/1110+22715003..22721050Glycerol-3-phosphate acyltransferase, chloroplast precursor, putative, expressed
LOC_Os10g42730Os.5962.1.S1_at11/1110+22722457..22731085VHS domain-containing protein, putative, expressed
LOC_Os10g42730Os.9977.2.S1_at11/1110+22722457..22731085VHS domain-containing protein, putative, expressed
LOC_Os10g42730Os.9977.1.S1_x_at10/1110+22722457..22731085VHS domain-containing protein, putative, expressed
LOC_Os10g42730Os.51613.1.S1_x_at5/1110+22722457..22731085VHS domain-containing protein, putative, expressed
LOC_Os10g42740Os.53927.1.S2_at2/1110+22724786..22731082expressed protein
LOC_Os10g42740OsAffx.15875.1.S1_at2/1110+22724786..22731082expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7130.2.S1_x_at--777--2851Chr10:22701521..22701545 (25 bp)
AAGTCGCTTGGTTGTTGGCCTGCAA
LOC_Os10g42690
Os.7130.2.S1_x_at--831--5791Chr10:22701569..22701593 (25 bp)
GACGCAGGTGCTAACCTCTGATGGA
LOC_Os10g42690
Os.7130.2.S1_x_at--322--8351Chr10:22701707..22701731 (25 bp)
GGCTGGTTAATCGATTCTTTGTGCA
LOC_Os10g42690
Os.7130.2.S1_x_at--300--8551Chr10:22701801..22701825 (25 bp)
TGGAGGTTCTGGGTCACTGCTTTGC
LOC_Os10g42690
Os.7130.2.S1_x_at--345--5771Chr10:22701852..22701876 (25 bp)
GACGTACACACACTATAGGACCTCG
LOC_Os10g42690
Os.7130.2.S1_x_at--463--9351Chr10:22701874..22701898 (25 bp)
TCGCTCTACCCTTTGATTATATCTC
LOC_Os10g42690
Os.7130.2.S1_x_at--782--10551Chr10:22701906..22701930 (25 bp)
TTCTTCTTCTTTGTCAGCAACCTTA
LOC_Os10g42690
Os.7130.2.S1_x_at--1060--2631Chr10:22701924..22701948 (25 bp)
AACCTTAGCTGCTGCTACTCTATAG
LOC_Os10g42690
Os.7130.2.S1_x_at--925--10211Chr10:22701956..22701980 (25 bp)
TATTCTTTCATACGCTTGTTCCATC
LOC_Os10g42690
Os.7130.2.S1_x_at--225--8811Chr10:22701972..22701996 (25 bp)
TGTTCCATCAAGTTAATCTGCTGCT
LOC_Os10g42690
Os.7130.2.S1_x_at--166--10071Chr10:22702014..22702038 (25 bp)
TAGTGAATCATCGTTCTTTCTGGAT
LOC_Os10g42690
Target Sequence 
AAGTCGCTTGGTTGTTGGCCTGCAATTTAGAATTTAGAAAAAAATGCTGACGCAGGTGCTAACCTCTGATGGAGATAAAG
ATTTCCTTGTTTAGGTGGGGCTGTTNACTACACGAAATGATAGGGCNTGGGNATGGATCGATGAGGTTGAATATAAATGA
TTAGCACAGAAGCTGACTGNNNTTAGAAGGCTGGTTAATCGATTCTTTGTGCAGCNAGTGCCTCCAATTTGNAGGCACNA
TCTAGGCACGGTTAGAAGAGACAGACACANTGACGATTCNTTGTTGCTGGAGGTTCTGGGTCACTGCTTTGCTGCTGTTT
GATGCNTNCACTGNCAAGTGACGTACACACACTATAGGACCTCGCTCTACCCTTTGATTATATCTCTCTATTTTTCTTCT
TCTTTGTCAGCAACCTTAGCTGCTGCTACTCTATAGCTAACTGTATTCTTTCATACGCTTGTTCCATCAAGTTAATCTGC
TGCTTAATGCCATTGATTCAATAGTGAATCATCGTTCTTTCTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7130.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis