Browse Element(s) Details


Os.25624.1.S1_at

Description gb:AK065123.1
DB_XREF= gi:32975141
TID=Os.25624.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.25624 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative acyltransferase (OSJNBa0035H01.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001P02, full insert sequence.
FL= gb:AK065123.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4272011/11Glycerol-3-phosphate acyltransferase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42690Os.7130.1.S1_at11/1110+22696125..22702067transcription factor jumonji, putative, expressed
LOC_Os10g42690Os.7130.2.S1_x_at11/1110+22696125..22702067transcription factor jumonji, putative, expressed
LOC_Os10g42700Os.15736.1.S1_at11/1110+22702516..22705386expressed protein
LOC_Os10g42710Os.11985.1.S1_at11/1110+22705656..22710023Poly polymerase catalytic domain containing protein, expressed
LOC_Os10g42710Os.11985.1.S1_a_at11/1110+22705656..22710023Poly polymerase catalytic domain containing protein, expressed
LOC_Os10g42710Os.11985.2.A1_a_at11/1110+22705656..22710023Poly polymerase catalytic domain containing protein, expressed
LOC_Os10g42720Os.25624.1.S1_at11/1110+22715003..22721050Glycerol-3-phosphate acyltransferase, chloroplast precursor, putative, expressed
LOC_Os10g42730Os.5962.1.S1_at11/1110+22722457..22731085VHS domain-containing protein, putative, expressed
LOC_Os10g42730Os.9977.2.S1_at11/1110+22722457..22731085VHS domain-containing protein, putative, expressed
LOC_Os10g42730Os.9977.1.S1_x_at10/1110+22722457..22731085VHS domain-containing protein, putative, expressed
LOC_Os10g42730Os.51613.1.S1_x_at5/1110+22722457..22731085VHS domain-containing protein, putative, expressed
LOC_Os10g42740Os.53927.1.S2_at2/1110+22724786..22731082expressed protein
LOC_Os10g42740OsAffx.15875.1.S1_at2/1110+22724786..22731082expressed protein
LOC_Os10g42750Os.46811.1.S1_at11/1110+22732764..22736602cellulose synthase-like protein D4, putative, expressed
LOC_Os10g42754Os.46116.1.S1_x_at11/1110+22736781..22740064expressed protein
LOC_Os10g42754Os.57384.1.S1_at10/1110+22736781..22740064expressed protein
LOC_Os10g42760NANA10+22740066..22741961pentatricopeptide, putative, expressed
LOC_Os10g42770Os.46857.1.S2_at11/1110+22743374..22745588expressed protein
LOC_Os10g42770Os.46857.1.S1_at11/1110+22743374..22745588expressed protein
LOC_Os10g42780Os.38152.1.S1_x_at11/1110+22745679..22749384LrgB-like family protein, expressed
LOC_Os10g42780Os.38152.1.S1_at11/1110+22745679..22749384LrgB-like family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009536cellular_componentplastid
GO:0004366molecular_functionglycerol-3-phosphate O-acyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25624.1.S1_at--845--1731Chr10:22720367..22720391 (25 bp)
ACCTTCATTTCTTTTCGACACAGCA
LOC_Os10g42720
Os.25624.1.S1_at--328--5471Chr10:22720395..22720419 (25 bp)
GAACTGCTGCCGACATTGCAATTTT
LOC_Os10g42720
Os.25624.1.S1_at--526--7651Chr10:22720472..22720496 (25 bp)
GGGAGGCTGTTACTGTCATGCAAAT
LOC_Os10g42720
Os.25624.1.S1_at--220--731Chr10:22720615..22720639 (25 bp)
ATGATTTTACCCAGCTGAATCCCAG
LOC_Os10g42720
Os.25624.1.S1_at--787--1691Chr10:22720638..22720662 (25 bp)
AGCCACACATGATGCGTTCGTTCAT
LOC_Os10g42720
Os.25624.1.S1_at--826--9272Chr10:22720825..22720849 (25 bp)
TCCTGTTTTCCTTTTGTTCCATGTA
LOC_Os10g42720
Os.25624.1.S1_at--902--92Chr10:22720855..22720879 (25 bp)
ATTCGATTTTGATCTCCAGGTTTGG
LOC_Os10g42720
Os.25624.1.S1_at--217--10071Chr10:22720905..22720929 (25 bp)
TAGTCTCTTAGTTTGTTGCCTCGAA
LOC_Os10g42720
Os.25624.1.S1_at--504--9171Chr10:22720921..22720945 (25 bp)
TGCCTCGAAGTTATACTCGGGCGCA
LOC_Os10g42720
Os.25624.1.S1_at--379--9431Chr10:22720937..22720961 (25 bp)
TCGGGCGCAACATGTCTGACTGATA
LOC_Os10g42720
Os.25624.1.S1_at--327--8871Chr10:22720968..22720992 (25 bp)
TGATGTTACTCGTTTCTGAACTTCC
LOC_Os10g42720
Target Sequence 
ACCTTCATTTCTTTTCGACACAGCAGATGAACTGCTGCCGACATTGCAATTTTTCCTGGCAGAACCTTTTAAACTTCGGT
ATCCTAACCCATACTAATCATGAAGGGGAGGCTGTTACTGTCATGCAAATCTTGCCTAGTATGATGATTTTACCCAGCTG
AATCCCAGCCACACATGATGCGTTCGTTCATTGTTTGCNCACAAATATTATTGCGTCATATGAGTATTCTTTGGGTCAGA
ACTGCACAGCAACGCGGCCTGGGCACTCAATNTGGCATGTTGTCTATGGGGTGCATGCTTGTTAACAGAAGAAGCCCAAC
ATGTGGGATTTTGTTTTTTGCGGTTAATTTTTTTCCTGTTTTCCTTTTGTTCCATGTATATATATTCGATTTTGATCTCC
AGGTTTGGAGATACAATGGTCAAAGTGTTATGATAGTCTCTTAGTTTGTTGCCTCGAAGTTATACTCGGGCGCAACATGT
CTGACTGATATTCTGATGATGTTACTCGTTTCTGAACTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25624.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis