Browse Element(s) Details


Os.46116.1.S1_x_at

Description gb:NM_197901.1
DB_XREF= gi:37537159
TID=Os.46116.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46116 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0056G17.1), mRNA.
PROD=unknown protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4275411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42720Os.25624.1.S1_at11/1110+22715003..22721050Glycerol-3-phosphate acyltransferase, chloroplast precursor, putative, expressed
LOC_Os10g42730Os.5962.1.S1_at11/1110+22722457..22731085VHS domain-containing protein, putative, expressed
LOC_Os10g42730Os.9977.2.S1_at11/1110+22722457..22731085VHS domain-containing protein, putative, expressed
LOC_Os10g42730Os.9977.1.S1_x_at10/1110+22722457..22731085VHS domain-containing protein, putative, expressed
LOC_Os10g42730Os.51613.1.S1_x_at5/1110+22722457..22731085VHS domain-containing protein, putative, expressed
LOC_Os10g42740Os.53927.1.S2_at2/1110+22724786..22731082expressed protein
LOC_Os10g42740OsAffx.15875.1.S1_at2/1110+22724786..22731082expressed protein
LOC_Os10g42750Os.46811.1.S1_at11/1110+22732764..22736602cellulose synthase-like protein D4, putative, expressed
LOC_Os10g42754Os.46116.1.S1_x_at11/1110+22736781..22740064expressed protein
LOC_Os10g42754Os.57384.1.S1_at10/1110+22736781..22740064expressed protein
LOC_Os10g42760NANA10+22740066..22741961pentatricopeptide, putative, expressed
LOC_Os10g42770Os.46857.1.S2_at11/1110+22743374..22745588expressed protein
LOC_Os10g42770Os.46857.1.S1_at11/1110+22743374..22745588expressed protein
LOC_Os10g42780Os.38152.1.S1_x_at11/1110+22745679..22749384LrgB-like family protein, expressed
LOC_Os10g42780Os.38152.1.S1_at11/1110+22745679..22749384LrgB-like family protein, expressed
LOC_Os10g42790Os.19940.1.S1_s_at11/1110+22749779..22752607Cytidylyltransferase family protein, expressed
LOC_Os10g42790Os.19940.1.S1_at11/1110+22749779..22752607Cytidylyltransferase family protein, expressed
LOC_Os10g42800OsAffx.30755.2.S1_at11/1110+22753530..22756895AMP-binding enzyme family protein
LOC_Os10g42800OsAffx.30755.1.S1_at11/1110+22753530..22756895AMP-binding enzyme family protein
LOC_Os10g42800OsAffx.30755.1.S1_x_at11/1110+22753530..22756895AMP-binding enzyme family protein
LOC_Os10g42810OsAffx.30756.1.S1_at11/1110+22757595..22757815hypothetical protein
LOC_Os10g42820Os.2998.1.S1_at11/1110+22758413..22763725early-responsive to dehydration protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46116.1.S1_x_at--16--5291Chr10:22738427..22738451 (25 bp)
GAATGTCAAACTTTTCGTTCCAGCT
LOC_Os10g42754
Os.46116.1.S1_x_at--888--10611Chr10:22738414..22738438 (25 bp)
TTCGTTCCAGCTTGCTTTATTGAAG
LOC_Os10g42754
Os.46116.1.S1_x_at--755--8991Chr10:22738394..22738418 (25 bp)
TGAAGTTATGCAGGTCCTTGCACCT
LOC_Os10g42754
Os.46116.1.S1_x_at--376--5092Chr10:22738375..22738399 (25 bp)
GCACCTGATCCACCTTTTAGTGATG
LOC_Os10g42754
Os.46116.1.S1_x_at--5--6291Chr10:22738124..22738148 (25 bp)
GATGTTTAGGCTCTTTATCAGCACA
LOC_Os10g42754
Os.46116.1.S1_x_at--10--3291Chr10:22738080..22738104 (25 bp)
CAAACAGTCCATATCTTCCAAGAAG
LOC_Os10g42754
Os.46116.1.S1_x_at--979--4871Chr10:22738050..22738074 (25 bp)
GCTATTGGAAAATGTGCTGCACTCA
LOC_Os10g42754
Os.46116.1.S1_x_at--156--2371Chr10:22737836..22737860 (25 bp)
AAAGCCTGTTACATGGCCGTGACAT
LOC_Os10g42754
Os.46116.1.S1_x_at--392--5171Chr10:22737655..22737679 (25 bp)
GCAAGCTGGTTTTGCATCCTGCAAT
LOC_Os10g42754
Os.46116.1.S1_x_at--1053--3731Chr10:22737613..22737637 (25 bp)
CTAAGATCAGTTCCTTCTGAGCTGA
LOC_Os10g42754
Os.46116.1.S1_x_at--562--8771Chr10:22737560..22737581 (22 bp)
TGTTATTTCTCGCTACTGCAGGGTA
LOC_Os10g42754
Target Sequence 
GAATGTCAAACTTTTCGTTCCAGCTTGCTTTATTGAAGTTATGCAGGTCCTTGCACCTGATCCACCTTTTAGTGATGAAA
TATTTAAGGAGAGATGTTTAGGCTCTTTATCAGCACATTTGCANACCTTGCTGAAACAAACAGTCCATATCTTCCAAGAA
GATCTTGCTATTGGAAAATGTGCTGCACTCAGAGTAAGAGTTTTTGCACGTGATGCAGCAAAAGCCTGTTACATGGCCGT
GACATCAGGAAATGAAAAAAAAGATATTCTTACATCACTTGAAGAGAGGTTATTGGATTTTGATGTCAAAGTTAGAATGC
AAGCTGGTTTTGCATCCTGCAATTTANGGCCAAATCAAATCTAAGATCAGTTCCTTCTGAGCTGATATTGCAGGCAGCAG
AGAAGCCACAAACTGNTGTTATTTCTCGCTACTGCAGGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46116.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis