Browse Element(s) Details


Os.2998.1.S1_at

Description gb:AK102587.1
DB_XREF= gi:32987796
TID=Os.2998.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.2998 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0056G17.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033098F01, full insert sequence.
FL= gb:AK102587.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4282011/11early-responsive to dehydration protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42750Os.46811.1.S1_at11/1110+22732764..22736602cellulose synthase-like protein D4, putative, expressed
LOC_Os10g42754Os.46116.1.S1_x_at11/1110+22736781..22740064expressed protein
LOC_Os10g42754Os.57384.1.S1_at10/1110+22736781..22740064expressed protein
LOC_Os10g42760NANA10+22740066..22741961pentatricopeptide, putative, expressed
LOC_Os10g42770Os.46857.1.S2_at11/1110+22743374..22745588expressed protein
LOC_Os10g42770Os.46857.1.S1_at11/1110+22743374..22745588expressed protein
LOC_Os10g42780Os.38152.1.S1_x_at11/1110+22745679..22749384LrgB-like family protein, expressed
LOC_Os10g42780Os.38152.1.S1_at11/1110+22745679..22749384LrgB-like family protein, expressed
LOC_Os10g42790Os.19940.1.S1_s_at11/1110+22749779..22752607Cytidylyltransferase family protein, expressed
LOC_Os10g42790Os.19940.1.S1_at11/1110+22749779..22752607Cytidylyltransferase family protein, expressed
LOC_Os10g42800OsAffx.30755.2.S1_at11/1110+22753530..22756895AMP-binding enzyme family protein
LOC_Os10g42800OsAffx.30755.1.S1_at11/1110+22753530..22756895AMP-binding enzyme family protein
LOC_Os10g42800OsAffx.30755.1.S1_x_at11/1110+22753530..22756895AMP-binding enzyme family protein
LOC_Os10g42810OsAffx.30756.1.S1_at11/1110+22757595..22757815hypothetical protein
LOC_Os10g42820Os.2998.1.S1_at11/1110+22758413..22763725early-responsive to dehydration protein, putative, expressed
LOC_Os10g42830Os.3001.1.S1_at11/1110+22765590..22770044Sugar transporter family protein, expressed
LOC_Os10g42840Os.2976.1.S1_at11/1110+22770675..22773572NADH:ubiquinone oxidoreductase 17.2 kD subunit family protein, expressed
LOC_Os10g42850Os.46843.2.S1_x_at11/1110+22777812..22778787WRKY DNA binding domain containing protein, expressed
LOC_Os10g42860Os.8501.1.S1_at10/1110+22782311..22784131ribosomal protein L35 containing protein, expressed
LOC_Os10g42870Os.2980.1.S1_at11/1110+22785007..22788050POT family protein, expressed
LOC_Os10g42880OsAffx.7892.1.S1_at11/1110+22788430..22796397retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2998.1.S1_at--1140--931Chr10:22758982..22759006 (25 bp)
AGGACAATCTGGAGCGCACGTCGGA
LOC_Os10g42820
Os.2998.1.S1_at--613--7191Chr10:22758963..22758987 (25 bp)
GTCGGAGCCAAACCTGAACCTCAAA
LOC_Os10g42820
Os.2998.1.S1_at--269--5431Chr10:22758948..22758972 (25 bp)
GAACCTCAAATCGTACCTGCAGAAC
LOC_Os10g42820
Os.2998.1.S1_at--170--9031Chr10:22758916..22758940 (25 bp)
TGCACCCCATTTTCCACATGTTTGA
LOC_Os10g42820
Os.2998.1.S1_at--1087--511Chr10:22758836..22758860 (25 bp)
ATCGACAAGGCGCAGCAACATCATC
LOC_Os10g42820
Os.2998.1.S1_at--906--3491Chr10:22758698..22758722 (25 bp)
CATGAGCATATGAGCCACTACCACA
LOC_Os10g42820
Os.2998.1.S1_at--228--5111Chr10:22758636..22758660 (25 bp)
GCACTTTGTCTACCATTATGGCGTC
LOC_Os10g42820
Os.2998.1.S1_at--330--10431Chr10:22758621..22758645 (25 bp)
TTATGGCGTCGACCCTTGATAATCG
LOC_Os10g42820
Os.2998.1.S1_at--433--6451Chr10:22758604..22758628 (25 bp)
GATAATCGCCCAGATAGTCTCTTAG
LOC_Os10g42820
Os.2998.1.S1_at--929--1131Chr10:22758589..22758613 (25 bp)
AGTCTCTTAGCTTCTGAATCACTAG
LOC_Os10g42820
Os.2998.1.S1_at--928--10491Chr10:22758504..22758528 (25 bp)
TTAACGACCGACTGGCTGCTGATAA
LOC_Os10g42820
Target Sequence 
AGGACAATCTGGAGCGCACGTCGGAGCCAAACCTGAACCTCAAATCGTACCTGCAGAACGCTTACCTGCACCCCATTTTC
CACATGTTTGAGCAGCAGCAGCAGCAGGAGCAGGAGCAGCAACGGGAGGAGAAGGTAGAGGTGCGAATCGACAAGGCGCA
GCAACATCATCATCGGCAGGTAGAGGAGGAAGAGGAGGAGAGCAAGAGCAGCCAGGCTACAACACACTACTACCACCATC
ACCATGAGCAGACCACAACGACGACACACCACCATTACCATCAGCATGAGCATATGAGCCACTACCACATGGGCCCCTCC
GACACAGCTGACTCACCCTCGCCGCCGCACTTTGTCTACCATTATGGCGTCGACCCTTGATAATCGCCCAGATAGTCTCT
TAGCTTCTGAATCACTAGATTGTTTGTTCTTTTGTTTTTTCCTTTTGTCAATTGGGGGTGATATTTTTATTCCTCTAATT
AACGACCGACTGGCTGCTGATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2998.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis