Browse Element(s) Details


Os.2980.1.S1_at

Description gb:AK070527.1
DB_XREF= gi:32980551
TID=Os.2980.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.2980 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative peptide transporter (OSJNBa0056G17.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023060H09, full insert sequence.
FL= gb:AK099267.1 gb:AK099219.1 gb:AK105726.1 gb:AK070527.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4287011/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42820Os.2998.1.S1_at11/1110+22758413..22763725early-responsive to dehydration protein, putative, expressed
LOC_Os10g42830Os.3001.1.S1_at11/1110+22765590..22770044Sugar transporter family protein, expressed
LOC_Os10g42840Os.2976.1.S1_at11/1110+22770675..22773572NADH:ubiquinone oxidoreductase 17.2 kD subunit family protein, expressed
LOC_Os10g42850Os.46843.2.S1_x_at11/1110+22777812..22778787WRKY DNA binding domain containing protein, expressed
LOC_Os10g42860Os.8501.1.S1_at10/1110+22782311..22784131ribosomal protein L35 containing protein, expressed
LOC_Os10g42870Os.2980.1.S1_at11/1110+22785007..22788050POT family protein, expressed
LOC_Os10g42880OsAffx.7892.1.S1_at11/1110+22788430..22796397retrotransposon protein, putative, unclassified
LOC_Os10g42900Os.46613.1.S2_at11/1110+22799307..22802248POT family protein, expressed
LOC_Os10g42900Os.46613.1.S1_s_at11/1110+22799307..22802248POT family protein, expressed
LOC_Os10g42900Os.46613.1.S1_at11/1110+22799307..22802248POT family protein, expressed
LOC_Os10g42910OsAffx.13097.1.S1_s_at4/1110+22802600..22812009transposon protein, putative, Mutator sub-class, expressed
LOC_Os10g42920OsAffx.6947.1.S1_at11/1110+22812227..22812651hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0015833biological_processpeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015197molecular_functionpeptide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2980.1.S1_at--18--1951Chr10:22787537..22787561 (25 bp)
ACGGCGGCAACCTGAGCATCGCGTG
LOC_Os10g42870
Os.2980.1.S1_at--421--9491Chr10:22787603..22787627 (25 bp)
TCTGCGGCATCGCTCAGCTGGAATT
LOC_Os10g42870
Os.2980.1.S1_at--478--1611Chr10:22787618..22787642 (25 bp)
AGCTGGAATTCTTCTACTCGGAGGC
LOC_Os10g42870
Os.2980.1.S1_at--544--491Chr10:22787792..22787816 (25 bp)
ATCTGGACTACTATTTCTGGCTCTG
LOC_Os10g42870
Os.2980.1.S1_at--534--7651Chr10:22787821..22787845 (25 bp)
GGGATCAGCGCCATCAACTTTGTGG
LOC_Os10g42870
Os.2980.1.S1_at--408--2531Chr10:22787836..22787860 (25 bp)
AACTTTGTGGTGTACGCCGCCTTTG
LOC_Os10g42870
Os.2980.1.S1_at--478--4531Chr10:22787851..22787875 (25 bp)
GCCGCCTTTGCCAAGAATTATACCG
LOC_Os10g42870
Os.2980.1.S1_at--841--151Chr10:22787867..22787891 (25 bp)
ATTATACCGTCAAGAGACTCGCCGT
LOC_Os10g42870
Os.2980.1.S1_at--688--2471Chr10:22787927..22787951 (25 bp)
AACACTGCCTTGTATTATTCCAATC
LOC_Os10g42870
Os.2980.1.S1_at--217--91Chr10:22787970..22787994 (25 bp)
ATTCCACTTGATTCGTTGAGCATGT
LOC_Os10g42870
Os.2980.1.S1_at--317--2251Chr10:22788020..22788044 (25 bp)
AAATAAAGGGCTGAATCCATGCATT
LOC_Os10g42870
Target Sequence 
ACGGCGGCAACCTGAGCATCGCGTGGCAGCTGCCGCAGTTCGTCATCCTGGCCTGCTCCGACGTCTTCTGCGGCATCGCT
CAGCTGGAATTCTTCTACTCGGAGGCCCCCGTGTCGATGCGGAGCCTCTGCTCGGCCTTCTCCTTCCTGGCGCTCTCGCT
GGGCTACTACGTCAACTCCCTCGTCGTCTCCATCGTCGCCGTCGTCACCACCACCTCGAACAAGGGCTGGCTCCCCGCCG
ACCTCAACGACGGCCATCTGGACTACTATTTCTGGCTCTGGACGGGGATCAGCGCCATCAACTTTGTGGTGTACGCCGCC
TTTGCCAAGAATTATACCGTCAAGAGACTCGCCGTCCCGCACTCGCACTGATCGTCTCCCTCATCCACCCAACACTGCCT
TGTATTATTCCAATCAACCATTCTTGTATTATNATTCCACTTGATTCGTTGAGCATGTATATAAACCAAATAAAAAATAA
ACCAAATAAAGGGCTGAATCCATGCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2980.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis