Browse Element(s) Details


Os.3001.1.S1_at

Description gb:AK102009.1
DB_XREF= gi:32987218
TID=Os.3001.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.3001 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative sugar transporter protein (OSJNBa0056G17.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033079P13, full insert sequence.
FL= gb:AK102009.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4283011/11Sugar transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42760NANA10+22740066..22741961pentatricopeptide, putative, expressed
LOC_Os10g42770Os.46857.1.S2_at11/1110+22743374..22745588expressed protein
LOC_Os10g42770Os.46857.1.S1_at11/1110+22743374..22745588expressed protein
LOC_Os10g42780Os.38152.1.S1_x_at11/1110+22745679..22749384LrgB-like family protein, expressed
LOC_Os10g42780Os.38152.1.S1_at11/1110+22745679..22749384LrgB-like family protein, expressed
LOC_Os10g42790Os.19940.1.S1_s_at11/1110+22749779..22752607Cytidylyltransferase family protein, expressed
LOC_Os10g42790Os.19940.1.S1_at11/1110+22749779..22752607Cytidylyltransferase family protein, expressed
LOC_Os10g42800OsAffx.30755.2.S1_at11/1110+22753530..22756895AMP-binding enzyme family protein
LOC_Os10g42800OsAffx.30755.1.S1_at11/1110+22753530..22756895AMP-binding enzyme family protein
LOC_Os10g42800OsAffx.30755.1.S1_x_at11/1110+22753530..22756895AMP-binding enzyme family protein
LOC_Os10g42810OsAffx.30756.1.S1_at11/1110+22757595..22757815hypothetical protein
LOC_Os10g42820Os.2998.1.S1_at11/1110+22758413..22763725early-responsive to dehydration protein, putative, expressed
LOC_Os10g42830Os.3001.1.S1_at11/1110+22765590..22770044Sugar transporter family protein, expressed
LOC_Os10g42840Os.2976.1.S1_at11/1110+22770675..22773572NADH:ubiquinone oxidoreductase 17.2 kD subunit family protein, expressed
LOC_Os10g42850Os.46843.2.S1_x_at11/1110+22777812..22778787WRKY DNA binding domain containing protein, expressed
LOC_Os10g42860Os.8501.1.S1_at10/1110+22782311..22784131ribosomal protein L35 containing protein, expressed
LOC_Os10g42870Os.2980.1.S1_at11/1110+22785007..22788050POT family protein, expressed
LOC_Os10g42880OsAffx.7892.1.S1_at11/1110+22788430..22796397retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3001.1.S1_at--1138--4731Chr10:22766241..22766265 (25 bp)
GCTGTTCTTGTGAATTTTGCCTCCA
LOC_Os10g42830
Os.3001.1.S1_at--568--3131Chr10:22766229..22766253 (25 bp)
AATTTTGCCTCCAATGCACTAGTCA
LOC_Os10g42830
Os.3001.1.S1_at--306--10711Chr10:22766205..22766225 (21 bp)
TTGCTTTCTCCCCATTGGAGGATTT
LOC_Os10g42830
Os.3001.1.S1_at--466--6611Chr10:22766070..22766094 (25 bp)
GATTGGAACTGGGATCCTCTTCTCT
LOC_Os10g42830
Os.3001.1.S1_at--610--1091Chr10:22766028..22766052 (25 bp)
AGTGGCGTCTCTTGTTTTCATATTC
LOC_Os10g42830
Os.3001.1.S1_at--426--10551Chr10:22766012..22766036 (25 bp)
TTCATATTCTTCATCGTGCCCGAGA
LOC_Os10g42830
Os.3001.1.S1_at--693--10731Chr10:22765963..22765987 (25 bp)
TTGAAGCCAGCCTGTAGATCCAGCT
LOC_Os10g42830
Os.3001.1.S1_at--47--5171Chr10:22765888..22765912 (25 bp)
GCAAGCTGTTGGACTGACTGACTGA
LOC_Os10g42830
Os.3001.1.S1_at--848--1971Chr10:22765868..22765892 (25 bp)
ACTGACTATCTTTGTGGTGTGGTAA
LOC_Os10g42830
Os.3001.1.S1_at--1007--1091Chr10:22765819..22765843 (25 bp)
AGTGAGTTATGTTGCTTTCGGTCGT
LOC_Os10g42830
Os.3001.1.S1_at--695--9431Chr10:22765802..22765826 (25 bp)
TCGGTCGTTGCTTTGGTTGGAGAAA
LOC_Os10g42830
Target Sequence 
GCTGTTCTTGTGAATTTTGCCTCCAATGCACTAGTCACTTTTGCTTTCTCCCCATTGGAGGATTTGATTGGAACTGGGAT
CCTCTTCTCTGCGTTTGGGGTGATTGCAGTGGCGTCTCTTGTTTTCATATTCTTCATCGTGCCCGAGACGAAAGGGCTCA
CCTTGGAAGAAATTGAAGCCAGCCTGTAGATCCAGCTGCCCTGCGGCTGCTGGCACGTAGGAGAACTGCTTATTATTCAG
AGATGTTGCAAGCTGTTGGACTGACTGACTGACTATCTTTGTGGTGTGGTAAGGTAACACAGTGAGATCCATTGAGAGTG
AGTTATGTTGCTTTCGGTCGTTGCTTTGGTTGGAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3001.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis