Browse Element(s) Details


Os.19940.1.S1_at

Description gb:AK073939.1
DB_XREF= gi:32983962
TID=Os.19940.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.19940 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cholinephosphate cytidylyltransferase (OSJNBa0056G17.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033076F05, full insert sequence.
FL= gb:AK060631.1 gb:AK073939.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4279011/11Cytidylyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42730Os.5962.1.S1_at11/1110+22722457..22731085VHS domain-containing protein, putative, expressed
LOC_Os10g42730Os.9977.2.S1_at11/1110+22722457..22731085VHS domain-containing protein, putative, expressed
LOC_Os10g42730Os.9977.1.S1_x_at10/1110+22722457..22731085VHS domain-containing protein, putative, expressed
LOC_Os10g42730Os.51613.1.S1_x_at5/1110+22722457..22731085VHS domain-containing protein, putative, expressed
LOC_Os10g42740Os.53927.1.S2_at2/1110+22724786..22731082expressed protein
LOC_Os10g42740OsAffx.15875.1.S1_at2/1110+22724786..22731082expressed protein
LOC_Os10g42750Os.46811.1.S1_at11/1110+22732764..22736602cellulose synthase-like protein D4, putative, expressed
LOC_Os10g42754Os.46116.1.S1_x_at11/1110+22736781..22740064expressed protein
LOC_Os10g42754Os.57384.1.S1_at10/1110+22736781..22740064expressed protein
LOC_Os10g42760NANA10+22740066..22741961pentatricopeptide, putative, expressed
LOC_Os10g42770Os.46857.1.S2_at11/1110+22743374..22745588expressed protein
LOC_Os10g42770Os.46857.1.S1_at11/1110+22743374..22745588expressed protein
LOC_Os10g42780Os.38152.1.S1_x_at11/1110+22745679..22749384LrgB-like family protein, expressed
LOC_Os10g42780Os.38152.1.S1_at11/1110+22745679..22749384LrgB-like family protein, expressed
LOC_Os10g42790Os.19940.1.S1_s_at11/1110+22749779..22752607Cytidylyltransferase family protein, expressed
LOC_Os10g42790Os.19940.1.S1_at11/1110+22749779..22752607Cytidylyltransferase family protein, expressed
LOC_Os10g42800OsAffx.30755.2.S1_at11/1110+22753530..22756895AMP-binding enzyme family protein
LOC_Os10g42800OsAffx.30755.1.S1_at11/1110+22753530..22756895AMP-binding enzyme family protein
LOC_Os10g42800OsAffx.30755.1.S1_x_at11/1110+22753530..22756895AMP-binding enzyme family protein
LOC_Os10g42810OsAffx.30756.1.S1_at11/1110+22757595..22757815hypothetical protein
LOC_Os10g42820Os.2998.1.S1_at11/1110+22758413..22763725early-responsive to dehydration protein, putative, expressed
LOC_Os10g42830Os.3001.1.S1_at11/1110+22765590..22770044Sugar transporter family protein, expressed
LOC_Os10g42840Os.2976.1.S1_at11/1110+22770675..22773572NADH:ubiquinone oxidoreductase 17.2 kD subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009058biological_processbiosynthesis
GO:0005739cellular_componentmitochondrion
GO:0004105molecular_functioncholine-phosphate cytidylyltransferase activity
GO:0004306molecular_functionethanolamine-phosphate cytidylyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19940.1.S1_at--979--5271Chr10:22750473..22750497 (25 bp)
GAATGGTTGGCCAATGCAGATCGCT
LOC_Os10g42790
Os.19940.1.S1_at--439--8451Chr10:22750466..22750490 (25 bp)
TGGCCAATGCAGATCGCTGGGTTGC
LOC_Os10g42790
Os.19940.1.S1_at--671--3431Chr10:22750457..22750481 (25 bp)
CAGATCGCTGGGTTGCTGGTTTCTT
LOC_Os10g42790
Os.19940.1.S1_at--796--5331Chr10:22750429..22750453 (25 bp)
GAAGTTTGAGGAACACTGCCACAAC
LOC_Os10g42790
Os.19940.1.S1_at--867--2451Chr10:22750296..22750442 (25 bp)
AACACTGCCACAACATGGAAACTGC
LOC_Os10g42790
Os.19940.1.S1_at--428--2191Chr10:22750287..22750433 (25 bp)
ACAACATGGAAACTGCCATCAAGGG
LOC_Os10g42790
Os.19940.1.S1_at--810--5971Chr10:22750252..22750276 (25 bp)
GAGAAATTGAGGAGGCAAACAAGCA
LOC_Os10g42790
Os.19940.1.S1_at--29--7711Chr10:22750214..22750238 (25 bp)
GGGTCTAATGCAGCAACCGGTGGCA
LOC_Os10g42790
Os.19940.1.S1_at--204--3731Chr10:22750210..22750234 (25 bp)
CTAATGCAGCAACCGGTGGCAGCGT
LOC_Os10g42790
Os.19940.1.S1_at--611--5031Chr10:22750202..22750226 (25 bp)
GCAACCGGTGGCAGCGTAATAAGTT
LOC_Os10g42790
Os.19940.1.S1_at--908--10551Chr10:22750102..22750126 (25 bp)
TTCTTGGTTGGCGGTTATAGTGTGA
LOC_Os10g42790
Target Sequence 
GAATGGTTGGCCAATGCAGATCGCTGGGTTGCTGGTTTCTTGGAGAAGTTTGAGGAACACTGCCACAACATGGAAACTGC
CATCAAGGGGCGTATCCAGGAGAAATTGAGGAGGCAAACAAGCAGAGGGATAATTGGGGGTCTAATGCAGCAACCGGTGG
CAGCGTAATAAGTTGTAGAGGAGAGATGACGTTGAGTTGGAGTAAGCTGCCCTGGGGTCACCACGGACGAGAAATGTAGT
GAAGATGCCTTCTTGGTTGGCGGTTATAGTGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19940.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis