Browse Element(s) Details


Os.5962.1.S1_at

Description gb:AK070183.1
DB_XREF= gi:32980207
TID=Os.5962.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5962 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023045B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023045B04, full insert sequence.
FL= gb:AK070183.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4273011/11VHS domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42690Os.7130.1.S1_at11/1110+22696125..22702067transcription factor jumonji, putative, expressed
LOC_Os10g42690Os.7130.2.S1_x_at11/1110+22696125..22702067transcription factor jumonji, putative, expressed
LOC_Os10g42700Os.15736.1.S1_at11/1110+22702516..22705386expressed protein
LOC_Os10g42710Os.11985.1.S1_at11/1110+22705656..22710023Poly polymerase catalytic domain containing protein, expressed
LOC_Os10g42710Os.11985.1.S1_a_at11/1110+22705656..22710023Poly polymerase catalytic domain containing protein, expressed
LOC_Os10g42710Os.11985.2.A1_a_at11/1110+22705656..22710023Poly polymerase catalytic domain containing protein, expressed
LOC_Os10g42720Os.25624.1.S1_at11/1110+22715003..22721050Glycerol-3-phosphate acyltransferase, chloroplast precursor, putative, expressed
LOC_Os10g42730Os.5962.1.S1_at11/1110+22722457..22731085VHS domain-containing protein, putative, expressed
LOC_Os10g42730Os.9977.2.S1_at11/1110+22722457..22731085VHS domain-containing protein, putative, expressed
LOC_Os10g42730Os.9977.1.S1_x_at10/1110+22722457..22731085VHS domain-containing protein, putative, expressed
LOC_Os10g42730Os.51613.1.S1_x_at5/1110+22722457..22731085VHS domain-containing protein, putative, expressed
LOC_Os10g42740Os.53927.1.S2_at2/1110+22724786..22731082expressed protein
LOC_Os10g42740OsAffx.15875.1.S1_at2/1110+22724786..22731082expressed protein
LOC_Os10g42750Os.46811.1.S1_at11/1110+22732764..22736602cellulose synthase-like protein D4, putative, expressed
LOC_Os10g42754Os.46116.1.S1_x_at11/1110+22736781..22740064expressed protein
LOC_Os10g42754Os.57384.1.S1_at10/1110+22736781..22740064expressed protein
LOC_Os10g42760NANA10+22740066..22741961pentatricopeptide, putative, expressed
LOC_Os10g42770Os.46857.1.S2_at11/1110+22743374..22745588expressed protein
LOC_Os10g42770Os.46857.1.S1_at11/1110+22743374..22745588expressed protein
LOC_Os10g42780Os.38152.1.S1_x_at11/1110+22745679..22749384LrgB-like family protein, expressed
LOC_Os10g42780Os.38152.1.S1_at11/1110+22745679..22749384LrgB-like family protein, expressed
LOC_Os10g42790Os.19940.1.S1_s_at11/1110+22749779..22752607Cytidylyltransferase family protein, expressed
LOC_Os10g42790Os.19940.1.S1_at11/1110+22749779..22752607Cytidylyltransferase family protein, expressed
LOC_Os10g42800OsAffx.30755.2.S1_at11/1110+22753530..22756895AMP-binding enzyme family protein
LOC_Os10g42800OsAffx.30755.1.S1_at11/1110+22753530..22756895AMP-binding enzyme family protein
LOC_Os10g42800OsAffx.30755.1.S1_x_at11/1110+22753530..22756895AMP-binding enzyme family protein

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0006891biological_processintra-Golgi vesicle-mediated transport
GO:0005795cellular_componentGolgi stack
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5962.1.S1_at--1063--6613Chr10:22727786..22727810 (25 bp)
GTTGGTATTGTCTTTTCCTCTTTGA
LOC_Os10g42730
Os.5962.1.S1_at--299--5012Chr10:22727850..22727874 (25 bp)
GCATGGACTGTTGATTCTGCTTCAT
LOC_Os10g42730
Os.5962.1.S1_at--706--10292Chr10:22727888..22727912 (25 bp)
TTTCCTTGCTCTTCTATCAGCATGA
LOC_Os10g42730
Os.5962.1.S1_at--1127--3393Chr10:22727905..22727929 (25 bp)
CAGCATGATTAGTTTTCGGGTCAGT
LOC_Os10g42730
Os.5962.1.S1_at--973--7811Chr10:22727923..22727947 (25 bp)
GGTCAGTGACTCAGTTTCTGGCCTA
LOC_Os10g42730
Os.5962.1.S1_at--97--10311Chr10:22727937..22727961 (25 bp)
TTTCTGGCCTATCCTGCATAATATG
LOC_Os10g42730
Os.5962.1.S1_at--273--5713Chr10:22728029..22728053 (25 bp)
GACTACCTTGTGTGAAGTGGCATGT
LOC_Os10g42730
Os.5962.1.S1_at--1051--8711Chr10:22728061..22728085 (25 bp)
TGTCGACGCGTTTTTCTGATGTTTT
LOC_Os10g42730
Os.5962.1.S1_at--696--10432Chr10:22728085..22728109 (25 bp)
TTATGTCGCTGTCACTTGGTATGTC
LOC_Os10g42730
Os.5962.1.S1_at--314--6932Chr10:22728212..22728236 (25 bp)
GTATGGATGCATGACTCTGATTGTT
LOC_Os10g42730
Os.5962.1.S1_at--564--3631Chr10:22728244..22728268 (25 bp)
CTTGCTGTCACTCGTTATGTCTTGG
LOC_Os10g42730
Target Sequence 
GTTGGTATTGTCTTTTCCTCTTTGAATGCAGCTATTATGTTGGTGAGTGATTGAATTTGGTTATGCATGGACTGTTGATT
CTGCTTCATCTCCTTCATCTCCTTTCCTTGCTCTTCTATCAGCATGATTAGTTTTCGGGTCAGTGACTCAGTTTCTGGCC
TATCCTGCATAATATGTGTTTGTTAAGTTTTGAGACATATGCTGTTGTAATTCAAATAAATAGTAACAAAAGTATAATTT
TTTGACTACCTTGTGTGAAGTGGCATGTGTTGTGCTGTCGACGCGTTTTTCTGATGTTTTTATGTCGCTGTCACTTGGTA
TGTCTTGGACATTCTATGATGAAATGACATTTTTAATGGATATTAAACCATGCGTTGTGATGTATAATTAATGCAAGTAC
AATTAAATGAAACGATTACCTTATCAGTATGGATGCATGACTCTGATTGTTTGCTCTTCTTGCTGTCACTCGTTATGTCT
TGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5962.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis